RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 MOB1AQ9H8S9 216 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 FAM221BA6H8Z2 402 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 ZNF780AO75290 641 aaPredicted RBP13.44□□□□□ -0.26
COL7A1-201ENST00000328333 LTB4RQ15722 352 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 TIGD5Q53EQ6 642 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 ACSM3Q53FZ2 586 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 HEPHL1Q6MZM0 1159 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 OR52H1Q8NGJ2 320 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 OR1F2PQ96R84 312 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 DOCK8Q8NF50 2099 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 PLGLAQ15195 96 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 TCTE1Q5JU00 501 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 LANCL3Q6ZV70 420 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 EMID1Q96A84 441 aaPredicted RBP13.43□□□□□ -0.26
COL7A1-201ENST00000328333 ZNF251Q9BRH9 671 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 STRADBQ9C0K7 418 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 C20orf85Q9H1P6 137 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 SLC2A6Q9UGQ3 507 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 FANCMQ8IYD8 2048 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 ACPPP15309 386 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 PRDX3P30048 256 aaKnown RBP13.43□□□□□ -0.26
COL7A1-201ENST00000328333 HMGCLP35914 325 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 SP3Q02447 781 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 GRB7Q14451 532 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 FAM74A1Q5RGS3 127 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 OR4D6Q8NGJ1 314 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 OR14L1PQ8NHC6 308 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 FAM122AQ96E09 287 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 TMEM19Q96HH6 336 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 XYLT2Q9H1B5 865 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 GBAP04062 536 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 GIPP09681 153 aaPredicted RBP13.43□□□□□ -0.26
COL7A1-201ENST00000328333 CD1EP15812 388 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 RAB28P51157 221 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 OPCMLQ14982 345 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 NRIP3Q9NQ35 241 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 CAMK2AQ9UQM7 478 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 YTHDF2Q9Y5A9 579 aaKnown RBP13.43□□□□□ -0.26
COL7A1-201ENST00000328333 CACNA1BQ00975 2339 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 POLR2CP19387 275 aaPredicted RBP13.43□□□□□ -0.26
COL7A1-201ENST00000328333 MAOBP27338 520 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 TIPARPQ7Z3E1 657 aaKnown RBP13.43□□□□□ -0.26
COL7A1-201ENST00000328333 ARL14EPQ8N8R7 260 aaPredicted RBP13.43□□□□□ -0.26
COL7A1-201ENST00000328333 LYSMD1Q96S90 227 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 TXLNGYQ9BZA5 131 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 NMNAT1Q9HAN9 279 aaPredicted RBP13.43□□□□□ -0.26
COL7A1-201ENST00000328333 NTN4Q9HB63 628 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 PDE7BQ9NP56 450 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 A6NLC8 198 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 HPNP05981 417 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 F2RL1P55085 397 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 RGNQ15493 299 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 NRARPQ7Z6K4 114 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 CCDC116Q8IYX3 515 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 M1APQ8TC57 530 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 EHFQ9NZC4 300 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 VAPAQ9P0L0 249 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 IL20RAQ9UHF4 553 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 CATR1Q13166 79 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 COMMD6Q7Z4G1 85 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 IGDCC3Q8IVU1 814 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 PKMYT1Q99640 499 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 DPH2Q9BQC3 489 aaPredicted RBP13.43□□□□□ -0.26
COL7A1-201ENST00000328333 SOX17Q9H6I2 414 aaPredicted RBP13.43□□□□□ -0.26
COL7A1-201ENST00000328333 RIMS3Q9UJD0 308 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 H3BSH0 61 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 C1QBP02746 253 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 SSTR4P31391 388 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 PREPP48147 710 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 FXYD4P59646 89 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 EXOSC6Q5RKV6 272 aaKnown RBP13.43□□□□□ -0.26
COL7A1-201ENST00000328333 KCNG3Q8TAE7 436 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 YIPF5Q969M3 257 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 COQ3Q9NZJ6 369 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 LAMB2P55268 1798 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 NCOR1O75376 2440 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 B3GNT8Q7Z7M8 397 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 OR1S2Q8NGQ3 325 aa13.43□□□□□ -0.26
COL7A1-201ENST00000328333 AK6Q9Y3D8 172 aaKnown RBP13.43□□□□□ -0.26
COL7A1-201ENST00000328333 SUMO1P63165 101 aaKnown RBP13.42□□□□□ -0.26
COL7A1-201ENST00000328333 ELOCQ15369 112 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 SIGLECL1Q8N7X8 197 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 OR4K13Q8NH42 304 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 LMF1Q96S06 567 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 MED18Q9BUE0 208 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 MRPL15Q9P015 296 aaKnown RBP13.42□□□□□ -0.26
COL7A1-201ENST00000328333 AQP9O43315 295 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 RNF144AP50876 292 aaPredicted RBP13.42□□□□□ -0.26
COL7A1-201ENST00000328333 PAGE3Q5JUK9 113 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 LYRM7Q5U5X0 104 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 PRAMEF8Q5VWM4 474 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 PRAMEF7Q5VXH5 474 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 WDR5BQ86VZ2 330 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 STT3BQ8TCJ2 826 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 CLEC4CQ8WTT0 213 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 SGCZQ96LD1 299 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 CNOT1A5YKK6 2376 aaKnown RBP13.42□□□□□ -0.26
COL7A1-201ENST00000328333 OPRD1P41143 372 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 SLC17A1Q14916 467 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms