RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 C3orf38Q5JPI3 329 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 MSANTD1Q6ZTZ1 278 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 TRIM46Q7Z4K8 759 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 BVESQ8NE79 360 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 NSMAFQ92636 917 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 SLC22A18Q96BI1 424 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 PFDN5Q99471 154 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 ZNF471Q9BX82 626 aaPredicted RBP10.14□□□□□ -0.79
LSM3-201ENST00000306024 ZDHHC5Q9C0B5 715 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 THSD1Q9NS62 852 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 SLC17A4Q9Y2C5 497 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 SLC6A5Q9Y345 797 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 A0A1W2PPK0 400 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 KANTRA0A1W2PQU2 76 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 E7EQ34 232 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 GFYI3L273 518 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 SAP18O00422 153 aaKnown RBP10.14□□□□□ -0.79
LSM3-201ENST00000306024 FMO6PO60774 539 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 WISP3O95389 354 aaPredicted RBP10.14□□□□□ -0.79
LSM3-201ENST00000306024 STATHP02808 62 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 GBAP04062 536 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 AGFG1P52594 562 aaKnown RBP10.14□□□□□ -0.79
LSM3-201ENST00000306024 RAP2BP61225 183 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 RPE65Q16518 533 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 ZNF704Q6ZNC4 412 aaPredicted RBP10.14□□□□□ -0.79
LSM3-201ENST00000306024 FAM129CQ86XR2 697 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 OR5J2Q8NH18 312 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 WDR20Q8TBZ3 569 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 EVA1AQ9H8M9 152 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 HRASLS2Q9NWW9 162 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 TAAR2Q9P1P5 351 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 USP36Q9P275 1121 aaKnown RBP10.14□□□□□ -0.79
LSM3-201ENST00000306024 TBC1D29Q9UFV1 150 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 KCNMB2Q9Y691 235 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 SEC16AO15027 2179 aa10.14□□□□□ -0.79
LSM3-201ENST00000306024 A0A1B0GVT2 93 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 TAPBPO15533 448 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 BCHEP06276 602 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 POU3F2P20265 443 aaPredicted RBP10.13□□□□□ -0.79
LSM3-201ENST00000306024 HHEXQ03014 270 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 TGM3Q08188 693 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 ATXN7L3Q14CW9 347 aaPredicted RBP10.13□□□□□ -0.79
LSM3-201ENST00000306024 DEFB133Q30KQ1 61 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 QSOX2Q6ZRP7 698 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 OVCH2Q7RTZ1 564 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 ZNF433Q8N7K0 673 aaPredicted RBP10.13□□□□□ -0.79
LSM3-201ENST00000306024 FAM181AQ8N9Y4 354 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 ZSCAN1Q8NBB4 408 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 KCT2Q8NC54 265 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 PXT1Q8NFP0 134 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 OR52E1Q8NGJ3 308 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 OR5K2Q8NHB8 316 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 YIPF5Q969M3 257 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 LINC00615Q96LM1 132 aaPredicted RBP10.13□□□□□ -0.79
LSM3-201ENST00000306024 TINAGL1Q9GZM7 467 aaPredicted RBP10.13□□□□□ -0.79
LSM3-201ENST00000306024 MFFQ9GZY8 342 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 TMEM185BQ9H7F4 350 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 ACER3Q9NUN7 267 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 NLGN3Q9NZ94 848 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 CSNK1G3Q9Y6M4 447 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 CPED1A4D0V7 1026 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 MFSD2BA6NFX1 497 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 SMAD9O15198 467 aaKnown RBP10.13□□□□□ -0.79
LSM3-201ENST00000306024 HRO43593 1189 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 REM1O75628 298 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 TEAD1P28347 426 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 IFNGR2P38484 337 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 AFF3P51826 1226 aaKnown RBP10.13□□□□□ -0.79
LSM3-201ENST00000306024 AKR1C2P52895 323 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 AKR1C1Q04828 323 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 SLC5A12Q1EHB4 618 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 ZNF630Q2M218 657 aaPredicted RBP10.13□□□□□ -0.79
LSM3-201ENST00000306024 ATRAIDQ6UW56 229 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 IQCHQ86VS3 1027 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 SVBPQ8N300 66 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 OR10H4Q8NGA5 316 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 SCMH1Q96GD3 660 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 MED18Q9BUE0 208 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 NTMT1Q9BV86 223 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 FLVCR2Q9UPI3 526 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 RIF1Q5UIP0 2472 aaKnown RBP10.13□□□□□ -0.79
LSM3-201ENST00000306024 A0A0G2JN53 185 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 TRDV1A0A1B0GX56 115 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 CASC3O15234 703 aaKnown RBP10.13□□□□□ -0.79
LSM3-201ENST00000306024 LANCL1O43813 399 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 FZD7O75084 574 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 C1GALT1C1LP0DN25 315 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 BUD31P41223 144 aaPredicted RBP10.13□□□□□ -0.79
LSM3-201ENST00000306024 GZMMP51124 257 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 SNRPGP62308 76 aaKnown RBP10.13□□□□□ -0.79
LSM3-201ENST00000306024 AVPI1Q5T686 147 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 C18orf63Q68DL7 685 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 TFAP2EQ6VUC0 442 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 ZNF551Q7Z340 670 aaPredicted RBP10.13□□□□□ -0.79
LSM3-201ENST00000306024 CEACAM19Q7Z692 300 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 MEX3DQ86XN8 651 aaKnown RBP10.13□□□□□ -0.79
LSM3-201ENST00000306024 OR5M3Q8NGP4 307 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 NEIL2Q969S2 332 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 RERGQ96A58 199 aaPredicted RBP10.13□□□□□ -0.79
LSM3-201ENST00000306024 DPH7Q9BTV6 452 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms