RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ZNF610Q8N9Z0 462 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 RSC1A1Q92681 617 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 CNIH4Q9P003 139 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 SERTAD3Q9UJW9 196 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 VSTM2BA6NLU5 285 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 ZNF780AO75290 641 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-201ENST00000295550 RPL34P49207 117 aaKnown RBP9.27□□□□□ -0.93
COL6A3-201ENST00000295550 GATMP50440 423 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 MBTPS1Q14703 1052 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 C6orf120Q7Z4R8 191 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 B3GNT8Q7Z7M8 397 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 OR52N2Q8NGI0 321 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 DDIT4LQ96D03 193 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 PDCD11Q14690 1871 aaKnown RBP9.27□□□□□ -0.93
COL6A3-201ENST00000295550 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-201ENST00000295550 GALTP07902 379 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 THBS3P49746 956 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 RGNQ15493 299 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 PTRH1Q86Y79 214 aaKnown RBP9.27□□□□□ -0.93
COL6A3-201ENST00000295550 PARP16Q8N5Y8 322 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 OR10K1Q8NGX5 313 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 KCNK12Q9HB15 430 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 POU2F3Q9UKI9 436 aa9.27□□□□□ -0.93
COL6A3-201ENST00000295550 TMEM189-UBE2V1I3L0A0 370 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 HTR6P50406 440 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 MAP4K2Q12851 820 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 SOHLH1Q5JUK2 328 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 RAET1LQ5VY80 246 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 NXPE4Q6UWF7 544 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 APOOLQ6UXV4 268 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 GPR137CQ8N3F9 429 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 OR1E3Q8WZA6 343 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 MSI2Q96DH6 328 aaKnown RBP9.26□□□□□ -0.93
COL6A3-201ENST00000295550 IL37Q9NZH6 218 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 GPR137BO60478 399 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 LIPCP11150 499 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 NHSL2Q5HYW2 709 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 SLC5A8Q8N695 610 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 GPR62Q9BZJ7 368 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 ARFGEF3Q5TH69 2177 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 TYRP1P17643 537 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 TAS2R19P59542 299 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 ARL6IP1Q15041 203 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 CLLU1OSQ5K130 101 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 SBSNQ6UWP8 590 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 RETREG3Q86VR2 466 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 TXNDC15Q96J42 360 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 UFSP2Q9NUQ7 469 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 PPP1R3DO95685 299 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 PAN3Q58A45 887 aaKnown RBP9.26□□□□□ -0.93
COL6A3-201ENST00000295550 BEX5Q5H9J7 111 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 GTF2H5Q6ZYL4 71 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 GAREM2Q75VX8 874 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 SERPINA12Q8IW75 414 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 OR52A5Q9H2C5 316 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 MEGF11A6BM72 1044 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 B4GAT1O43505 415 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 GABRR1P24046 479 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 PRDX3P30048 256 aaKnown RBP9.26□□□□□ -0.93
COL6A3-201ENST00000295550 EBPQ15125 230 aaKnown RBP9.26□□□□□ -0.93
COL6A3-201ENST00000295550 NRMQ8IXM6 262 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 SIMC1Q8NDZ2 872 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 ANKK1Q8NFD2 765 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 SETD7Q8WTS6 366 aaKnown RBP9.26□□□□□ -0.93
COL6A3-201ENST00000295550 SENP5Q96HI0 755 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-201ENST00000295550 BTF3L4Q96K17 158 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 IL26Q9NPH9 171 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 KMT2EQ8IZD2 1858 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 LOC105369274A0A096LPK9 316 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 SDC3O75056 442 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 PNPP00491 289 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 SLC10A1Q14973 349 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 HEPHL1Q6MZM0 1159 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 MAMDC2Q7Z304 686 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-201ENST00000295550 PIWIL3Q7Z3Z3 882 aaKnown RBP9.26□□□□□ -0.93
COL6A3-201ENST00000295550 GKN2Q86XP6 184 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 UEVLDQ8IX04 471 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 OR4N4Q8N0Y3 316 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 OR9Q2Q8NGE9 314 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 SGK3Q96BR1 496 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 PDLIM5Q96HC4 596 aaKnown RBP9.26□□□□□ -0.93
COL6A3-201ENST00000295550 PTTG3PQ9NZH4 202 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 A0A1W2PPV4 95 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 CDHR4A6H8M9 788 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 FBXO24O75426 580 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 SPINT3P49223 89 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 GGTA1PQ4G0N0 100 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 ALKAL2Q6UX46 152 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 ZFAND1Q8TCF1 268 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 SLC2A11Q9BYW1 496 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 GAPDHSO14556 408 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-201ENST00000295550 KIAA0355O15063 1070 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 CLDN6P56747 220 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 TEAD2Q15562 447 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 RTP2Q5QGT7 225 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 ASPGQ86U10 573 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 CPOQ8IVL8 374 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 OR51L1Q8NGJ5 315 aa9.26□□□□□ -0.93
COL6A3-201ENST00000295550 SMG9Q9H0W8 520 aaKnown RBP9.26□□□□□ -0.93
COL6A3-201ENST00000295550 MPIG6BO95866 241 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms