RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CT62P0C5K7 136 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 SAGP10523 405 aaPredicted RBP11.79□□□□□ -0.52
LINC00540-203ENST00000631321 PEPDP12955 493 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 ZNF24P17028 368 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 ZNF3P17036 446 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 LSSP48449 732 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 PITPNBP48739 271 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 NRG3P56975 720 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 ACTC1P68032 377 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 ACTA1P68133 377 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 CRMP1Q14194 572 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 GPR18Q14330 331 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 EXOSC7Q15024 291 aaKnown RBP11.79□□□□□ -0.52
LINC00540-203ENST00000631321 TCEA2Q15560 299 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 RD3Q7Z3Z2 195 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 CEACAM19Q7Z692 300 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 LSRQ86X29 649 aaPredicted RBP11.79□□□□□ -0.52
LINC00540-203ENST00000631321 TMEFF1Q8IYR6 380 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 CA13Q8N1Q1 262 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 C17orf47Q8NEP4 570 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 OR4C6Q8NH72 309 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 SMPDL3BQ92485 455 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 FAM3CQ92520 227 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 RFT1Q96AA3 541 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 C4orf36Q96KX1 117 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 GTPBP2Q9BX10 602 aaKnown RBP11.79□□□□□ -0.52
LINC00540-203ENST00000631321 OR51V1Q9H2C8 321 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 EVA1BQ9NVM1 165 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 ING3Q9NXR8 418 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 SERTAD3Q9UJW9 196 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 ENTPD2Q9Y5L3 495 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 SCN3AQ9NY46 2000 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 TRAV27A0A087WT01 109 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 A0A1B0GWA3 101 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 LANCL1O43813 399 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 GALR3O60755 368 aaPredicted RBP11.79□□□□□ -0.52
LINC00540-203ENST00000631321 CBX7O95931 251 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 TFPIP10646 304 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 ACSL1P33121 698 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 RAB25P57735 213 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 RPS7P62081 194 aaKnown RBP11.79□□□□□ -0.52
LINC00540-203ENST00000631321 GAS6Q14393 721 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 FAM27D1Q5T7N8 215 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 SYCE2Q6PIF2 218 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 RTL4Q6ZR62 310 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 ZAR1Q86SH2 424 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 SHISA5Q8N114 240 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 MS4A15Q8N5U1 240 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 OR10G6Q8NH81 332 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 CNOT9Q92600 299 aaKnown RBP11.79□□□□□ -0.52
LINC00540-203ENST00000631321 ANKRD9Q96BM1 317 aaPredicted RBP11.79□□□□□ -0.52
LINC00540-203ENST00000631321 LRFN5Q96NI6 719 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 THAP7Q9BT49 309 aaPredicted RBP11.79□□□□□ -0.52
LINC00540-203ENST00000631321 HDHD2Q9H0R4 259 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 SLC28A3Q9HAS3 691 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 MCCC2Q9HCC0 563 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 ST6GALNAC2Q9UJ37 374 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 NPFFR2Q9Y5X5 522 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 C5orf42Q9H799 3197 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 ATG2AQ2TAZ0 1938 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 FAM221BA6H8Z2 402 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 RASGRP1O95267 797 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 PPP1R3DO95685 299 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 PAHP00439 452 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 MRPL3P09001 348 aaKnown RBP11.78□□□□□ -0.52
LINC00540-203ENST00000631321 HOXB2P14652 356 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 SLC6A6P31641 620 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 OR10A3P58181 314 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 OR12D2P58182 307 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 SLC3A1Q07837 685 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 FAAH2Q6GMR7 532 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 ARHGAP11AQ6P4F7 1023 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 IL20RBQ6UXL0 311 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 SLC44A3Q8N4M1 653 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 ZNF655Q8N720 491 aaPredicted RBP11.78□□□□□ -0.52
LINC00540-203ENST00000631321 SAMD12Q8N8I0 201 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 OR5T3Q8NGG3 340 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 OR51A7Q8NH64 312 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 SIPA1Q96FS4 1042 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 LMAN2LQ9H0V9 348 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 RPRD1BQ9NQG5 326 aaKnown RBP11.78□□□□□ -0.52
LINC00540-203ENST00000631321 WDR70Q9NW82 654 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 TRAV1-2A0A0B4J238 106 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 C2orf74A8MZ97 194 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 J3QLW9 94 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 ALX3O95076 343 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 IFNGP01579 166 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 SLC35E2P0CK97 266 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 CLUP10909 449 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 ZNF19P17023 458 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 AHCYP23526 432 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 ACAA2P42765 397 aaKnown RBP11.78□□□□□ -0.52
LINC00540-203ENST00000631321 SRP54P61011 504 aaKnown RBP11.78□□□□□ -0.52
LINC00540-203ENST00000631321 ALG11Q2TAA5 492 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 ACSM3Q53FZ2 586 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 BICRALQ6AI39 1079 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 THOC7Q6I9Y2 204 aaKnown RBP11.78□□□□□ -0.52
LINC00540-203ENST00000631321 PYHIN1Q6K0P9 492 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 ANKRD54Q6NXT1 300 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 LINC00114Q6XXX2 140 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms