RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 HOXB9P17482 250 aaPredicted RBP12.72□□□□□ -0.37
PNKP-223ENST00000629179 NCF2P19878 526 aaPredicted RBP12.72□□□□□ -0.37
PNKP-223ENST00000629179 CAPN3P20807 821 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 RPS4Y1P22090 263 aaKnown RBP12.72□□□□□ -0.37
PNKP-223ENST00000629179 PEX19P40855 299 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 MAGEA8P43361 318 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 ATP4BP51164 291 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 MERTKQ12866 999 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 SELENBP1Q13228 472 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 SQLEQ14534 574 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 GUSBP1Q15486 140 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 RGNQ15493 299 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 PAGE3Q5JUK9 113 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 SLC38A5Q8WUX1 472 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 ST8SIA1Q92185 356 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 SRXN1Q9BYN0 137 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 COQ10BQ9H8M1 238 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 ACER3Q9NUN7 267 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 SLC25A37Q9NYZ2 338 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 P2RX2Q9UBL9 471 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 ROS1P08922 2347 aa12.72□□□□□ -0.37
PNKP-223ENST00000629179 A0A1W2PNR3 127 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 GJE1A6NN92 205 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 PLGP00747 810 aaPredicted RBP12.71□□□□□ -0.37
PNKP-223ENST00000629179 BCHEP06276 602 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 NUDT7P0C024 238 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 TFPTP0C1Z6 253 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 IL7RP16871 459 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 CPOXP36551 454 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 FAM27E3Q08E93 113 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 RPS26P11Q5JNZ5 115 aaPredicted RBP12.71□□□□□ -0.37
PNKP-223ENST00000629179 ZNF474Q6S9Z5 364 aaPredicted RBP12.71□□□□□ -0.37
PNKP-223ENST00000629179 PLEKHM3Q6ZWE6 761 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 FAM214BQ7L5A3 538 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 TMEM200AQ86VY9 491 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 LSRQ86X29 649 aaPredicted RBP12.71□□□□□ -0.37
PNKP-223ENST00000629179 MSRB3Q8IXL7 192 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 ARFGAP2Q8N6H7 521 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 ZNF610Q8N9Z0 462 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 ZNF563Q8TA94 476 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 FAM222BQ8WU58 562 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 WDR60Q8WVS4 1066 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 STON2Q8WXE9 905 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 TMEM234Q8WY98 164 aa12.71□□□□□ -0.37
PNKP-223ENST00000629179 HRNRQ86YZ3 2850 aaPredicted RBP12.7□□□□□ -0.38
PNKP-223ENST00000629179 A0A0G2JND7 137 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 AP3D1O14617 1153 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 DBIP07108 87 aaKnown RBP12.7□□□□□ -0.38
PNKP-223ENST00000629179 EPXP11678 715 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 NID1P14543 1247 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 IDH2P48735 452 aaKnown RBP12.7□□□□□ -0.38
PNKP-223ENST00000629179 CRISP3P54108 245 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 CTBP2P56545 445 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 SORDQ00796 357 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 ZNF239Q16600 458 aaKnown RBP12.7□□□□□ -0.38
PNKP-223ENST00000629179 LRIF1Q5T3J3 769 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 MRPL2Q5T653 305 aaKnown RBP12.7□□□□□ -0.38
PNKP-223ENST00000629179 VRK2Q86Y07 508 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 CMIPQ8IY22 773 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 PEX5LQ8IYB4 626 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 OR52P1PQ8NH57 321 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 PMM1Q92871 262 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 TMEM19Q96HH6 336 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 GMPPAQ96IJ6 420 aaPredicted RBP12.7□□□□□ -0.38
PNKP-223ENST00000629179 TIGARQ9NQ88 270 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 EXOSC3Q9NQT5 275 aaKnown RBP12.7□□□□□ -0.38
PNKP-223ENST00000629179 CTPS2Q9NRF8 586 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 DNAJB12Q9NXW2 375 aaKnown RBP12.7□□□□□ -0.38
PNKP-223ENST00000629179 CALML5Q9NZT1 146 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 VAPAQ9P0L0 249 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 PROCRQ9UNN8 238 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 EMC9Q9Y3B6 208 aa12.7□□□□□ -0.38
PNKP-223ENST00000629179 DSPPQ9NZW4 1301 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 SS18L1O75177 396 aaPredicted RBP12.69□□□□□ -0.38
PNKP-223ENST00000629179 CTAG2O75638 210 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 CD8BP10966 210 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 SLC7A1P30825 629 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 CD79BP40259 229 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 IRX1P78414 480 aaPredicted RBP12.69□□□□□ -0.38
PNKP-223ENST00000629179 SF3A3Q12874 501 aaKnown RBP eCLIP12.69□□□□□ -0.385e-6■■■■■ 29.5
PNKP-223ENST00000629179 GNA13Q14344 377 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 C3orf33Q6P1S2 294 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 ZNF836Q6ZNA1 936 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 FCRLAQ7L513 359 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 ABHD3Q8WU67 409 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 NRGNQ92686 78 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 MAL2Q969L2 176 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 CPNE4Q96A23 557 aaPredicted RBP12.69□□□□□ -0.38
PNKP-223ENST00000629179 REXO5Q96IC2 774 aaKnown RBP12.69□□□□□ -0.38
PNKP-223ENST00000629179 OR5B2Q96R09 309 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 GPATCH1Q9BRR8 931 aaKnown RBP12.69□□□□□ -0.38
PNKP-223ENST00000629179 CCDC106Q9BWC9 280 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 RAD21L1Q9H4I0 556 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 RABEP2Q9H5N1 569 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 ZNF385DQ9H6B1 395 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 PLSCR4Q9NRQ2 329 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 SERINC1Q9NRX5 453 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 FGFR1OP2Q9NVK5 253 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 RLIMQ9NVW2 624 aa12.69□□□□□ -0.38
PNKP-223ENST00000629179 TMEM45AQ9NWC5 275 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms