RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 SRXN1Q9BYN0 137 aa21.39■■□□□ 1.01
SHMT1-206ENST00000579558 MTHFD2LQ9H903 347 aaPredicted RBP21.39■■□□□ 1.01
SHMT1-206ENST00000579558 DNAJB12Q9NXW2 375 aaKnown RBP21.39■■□□□ 1.01
SHMT1-206ENST00000579558 CCDC167Q9P0B6 97 aa21.39■■□□□ 1.01
SHMT1-206ENST00000579558 POLQO75417 2590 aa21.39■■□□□ 1.01
SHMT1-206ENST00000579558 NR5A2O00482 541 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 SS18L1O75177 396 aaPredicted RBP21.38■■□□□ 1.01
SHMT1-206ENST00000579558 SLC7A1P30825 629 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 RYKP34925 604 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 DSTNP60981 165 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 MERTKQ12866 999 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 ZNF239Q16600 458 aaKnown RBP21.38■■□□□ 1.01
SHMT1-206ENST00000579558 C3orf33Q6P1S2 294 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 ZNF474Q6S9Z5 364 aaPredicted RBP21.38■■□□□ 1.01
SHMT1-206ENST00000579558 FUNDC1Q8IVP5 155 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 CMIPQ8IY22 773 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 OR6K3Q8NGY3 331 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 WDR60Q8WVS4 1066 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 ROBO4Q8WZ75 1007 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 POLDIP3Q9BY77 421 aaKnown RBP21.38■■□□□ 1.01
SHMT1-206ENST00000579558 PAIP1Q9H074 479 aaKnown RBP21.38■■□□□ 1.01
SHMT1-206ENST00000579558 COQ10BQ9H8M1 238 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 EXOSC3Q9NQT5 275 aaKnown RBP21.38■■□□□ 1.01
SHMT1-206ENST00000579558 GLRX2Q9NS18 164 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 ACER3Q9NUN7 267 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 PCDHB14Q9Y5E9 798 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 MPDZO75970 2070 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 CSMD2Q7Z408 3487 aa21.38■■□□□ 1.01
SHMT1-206ENST00000579558 RPS4Y1P22090 263 aaKnown RBP21.37■■□□□ 1.01
SHMT1-206ENST00000579558 CD79BP40259 229 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 ATP4BP51164 291 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 PLAURQ03405 335 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 FAM27E3Q08E93 113 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 GNA13Q14344 377 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 DAZAP2Q15038 168 aaPredicted RBP21.37■■□□□ 1.01
SHMT1-206ENST00000579558 MAPK11Q15759 364 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 GTF2IRD2BQ6EKJ0 949 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 BLOC1S3Q6QNY0 202 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 PLEKHM3Q6ZWE6 761 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 GTF2IRD2Q86UP8 949 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 ZNF610Q8N9Z0 462 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 CNOT9Q92600 299 aaKnown RBP21.37■■□□□ 1.01
SHMT1-206ENST00000579558 PMM1Q92871 262 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 SPDL1Q96EA4 605 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 SLC39A3Q9BRY0 314 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 SERINC1Q9NRX5 453 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 RASSF1Q9NS23 344 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 CALML5Q9NZT1 146 aa21.37■■□□□ 1.01
SHMT1-206ENST00000579558 A0A096LPI6 279 aa21.36■■□□□ 1.01
SHMT1-206ENST00000579558 A0A1W2PNR3 127 aa21.36■■□□□ 1.01
SHMT1-206ENST00000579558 FAM221AA4D161 298 aa21.36■■□□□ 1.01
SHMT1-206ENST00000579558 SH3D21A4FU49 640 aa21.36■■□□□ 1.01
SHMT1-206ENST00000579558 BCHEP06276 602 aa21.36■■□□□ 1.01
SHMT1-206ENST00000579558 DBIP07108 87 aaKnown RBP21.36■■□□□ 1.01
SHMT1-206ENST00000579558 PABPC4LP0CB38 370 aaKnown RBP21.36■■□□□ 1.01
SHMT1-206ENST00000579558 POU2F1P14859 743 aa21.36■■□□□ 1.01
SHMT1-206ENST00000579558 IL7RP16871 459 aa21.36■■□□□ 1.01
SHMT1-206ENST00000579558 KCNJ5P48544 419 aa21.36■■□□□ 1.01
SHMT1-206ENST00000579558 IRX1P78414 480 aaPredicted RBP21.36■■□□□ 1.01
SHMT1-206ENST00000579558 SQLEQ14534 574 aa21.36■■□□□ 1.01
SHMT1-206ENST00000579558 AGKQ53H12 422 aa21.36■■□□□ 1.01
SHMT1-206ENST00000579558 PEX5LQ8IYB4 626 aa21.36■■□□□ 1.01
SHMT1-206ENST00000579558 RNF128Q8TEB7 428 aa21.36■■□□□ 1.01
SHMT1-206ENST00000579558 DACH2Q96NX9 599 aa21.36■■□□□ 1.01
SHMT1-206ENST00000579558 CLEC4MQ9H2X3 399 aaPredicted RBP21.36■■□□□ 1.01
SHMT1-206ENST00000579558 THUMPD1Q9NXG2 353 aaKnown RBP21.36■■□□□ 1.01
SHMT1-206ENST00000579558 ELOVL5Q9NYP7 299 aa21.36■■□□□ 1.01
SHMT1-206ENST00000579558 NDRG3Q9UGV2 375 aa21.36■■□□□ 1.01
SHMT1-206ENST00000579558 ITGB1BP2Q9UKP3 347 aa21.36■■□□□ 1.01
SHMT1-206ENST00000579558 TMEM247A6NEH6 219 aa21.35■■□□□ 1.01
SHMT1-206ENST00000579558 CLIC1O00299 241 aa21.35■■□□□ 1.01
SHMT1-206ENST00000579558 EDF1O60869 148 aaKnown RBP21.35■■□□□ 1.01
SHMT1-206ENST00000579558 NID1P14543 1247 aa21.35■■□□□ 1.01
SHMT1-206ENST00000579558 PCYT1AP49585 367 aa21.35■■□□□ 1.01
SHMT1-206ENST00000579558 CRISP3P54108 245 aa21.35■■□□□ 1.01
SHMT1-206ENST00000579558 FBXW10Q5XX13 1052 aa21.35■■□□□ 1.01
SHMT1-206ENST00000579558 ABHD3Q8WU67 409 aa21.35■■□□□ 1.01
SHMT1-206ENST00000579558 SLC38A5Q8WUX1 472 aa21.35■■□□□ 1.01
SHMT1-206ENST00000579558 STON2Q8WXE9 905 aa21.35■■□□□ 1.01
SHMT1-206ENST00000579558 OR5B2Q96R09 309 aa21.35■■□□□ 1.01
SHMT1-206ENST00000579558 RAD21L1Q9H4I0 556 aa21.35■■□□□ 1.01
SHMT1-206ENST00000579558 NPHS2Q9NP85 383 aa21.35■■□□□ 1.01
SHMT1-206ENST00000579558 DCTN4Q9UJW0 460 aa21.35■■□□□ 1.01
SHMT1-206ENST00000579558 ANKRD17O75179 2603 aaKnown RBP21.34■■□□□ 1.01
SHMT1-206ENST00000579558 TFPTP0C1Z6 253 aa21.34■■□□□ 1.01
SHMT1-206ENST00000579558 HOXB9P17482 250 aaPredicted RBP21.34■■□□□ 1.01
SHMT1-206ENST00000579558 AGTR1P30556 359 aa21.34■■□□□ 1.01
SHMT1-206ENST00000579558 APOBEC1P41238 236 aaKnown RBP21.34■■□□□ 1.01
SHMT1-206ENST00000579558 RNPS1Q15287 305 aaKnown RBP21.34■■□□□ 1.01
SHMT1-206ENST00000579558 RGNQ15493 299 aa21.34■■□□□ 1.01
SHMT1-206ENST00000579558 EXOC3L2Q2M3D2 409 aa21.34■■□□□ 1.01
SHMT1-206ENST00000579558 MRPL2Q5T653 305 aaKnown RBP21.34■■□□□ 1.01
SHMT1-206ENST00000579558 FCRLAQ7L513 359 aa21.34■■□□□ 1.01
SHMT1-206ENST00000579558 GRINAQ7Z429 371 aa21.34■■□□□ 1.01
SHMT1-206ENST00000579558 SLC25A43Q8WUT9 341 aaPredicted RBP21.34■■□□□ 1.01
SHMT1-206ENST00000579558 NRGNQ92686 78 aa21.34■■□□□ 1.01
SHMT1-206ENST00000579558 TMEM19Q96HH6 336 aa21.34■■□□□ 1.01
SHMT1-206ENST00000579558 CCDC106Q9BWC9 280 aa21.34■■□□□ 1.01
SHMT1-206ENST00000579558 CTPS2Q9NRF8 586 aa21.34■■□□□ 1.01
SHMT1-206ENST00000579558 PLSCR4Q9NRQ2 329 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms