RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ZNF527Q8NB42 609 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 RNF214Q8ND24 703 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 MS4A5Q9H3V2 200 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 OBP2BQ9NPH6 170 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 MRTO4Q9UKD2 239 aaKnown RBP13.85□□□□□ -0.19
VPS53-218ENST00000575207 LCE6AA0A183 80 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 HOXA3O43365 443 aaPredicted RBP13.84□□□□□ -0.19
VPS53-218ENST00000575207 SYNGR3O43761 229 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 MPIG6BO95866 241 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 PAX7P23759 505 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 MAPK12P53778 367 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 GRAMD1BQ3KR37 738 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 C3orf36Q3SXR2 165 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 C9orf135Q5VTT2 229 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 KLHL24Q6TFL4 600 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 FIP1L1Q6UN15 594 aaKnown RBP13.84□□□□□ -0.19
VPS53-218ENST00000575207 CNGA4Q8IV77 575 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 NOA1Q8NC60 698 aaKnown RBP13.84□□□□□ -0.19
VPS53-218ENST00000575207 OR9A2Q8NGT5 310 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 HES6Q96HZ4 224 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 OCSTAMPQ9BR26 566 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 DERL2Q9GZP9 239 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 PFDN4Q9NQP4 134 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 REV1Q9UBZ9 1251 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 ADAM29Q9UKF5 820 aa13.84□□□□□ -0.19
VPS53-218ENST00000575207 H0YIV9 168 aa13.83□□□□□ -0.2
VPS53-218ENST00000575207 K7EIL1 84 aa13.83□□□□□ -0.2
VPS53-218ENST00000575207 S100BP04271 92 aaPredicted RBP13.83□□□□□ -0.2
VPS53-218ENST00000575207 LTA4HP09960 611 aaKnown RBP13.83□□□□□ -0.2
VPS53-218ENST00000575207 PIK3CGP48736 1102 aa13.83□□□□□ -0.2
VPS53-218ENST00000575207 TEDDM1Q5T9Z0 273 aa13.83□□□□□ -0.2
VPS53-218ENST00000575207 ABLIM2Q6H8Q1 611 aa13.83□□□□□ -0.2
VPS53-218ENST00000575207 RETREG3Q86VR2 466 aa13.83□□□□□ -0.2
VPS53-218ENST00000575207 SYCE1Q8N0S2 351 aa13.83□□□□□ -0.2
VPS53-218ENST00000575207 TRPC4APQ8TEL6 797 aa13.83□□□□□ -0.2
VPS53-218ENST00000575207 JADE3Q92613 823 aa13.83□□□□□ -0.2
VPS53-218ENST00000575207 CERS2Q96G23 380 aa13.83□□□□□ -0.2
VPS53-218ENST00000575207 SERPINI1Q99574 410 aa13.83□□□□□ -0.2
VPS53-218ENST00000575207 PRDM13Q9H4Q3 707 aa13.83□□□□□ -0.2
VPS53-218ENST00000575207 Q9N2J8 555 aa13.83□□□□□ -0.2
VPS53-218ENST00000575207 PPANQ9NQ55 473 aaKnown RBP13.83□□□□□ -0.2
VPS53-218ENST00000575207 CRNNQ9UBG3 495 aaPredicted RBP13.83□□□□□ -0.2
VPS53-218ENST00000575207 OPTCQ9UBM4 332 aa13.83□□□□□ -0.2
VPS53-218ENST00000575207 NKX1-2Q9UD57 310 aaPredicted RBP13.83□□□□□ -0.2
VPS53-218ENST00000575207 AUP1Q9Y679 476 aa13.83□□□□□ -0.2
VPS53-218ENST00000575207 CSMD3Q7Z407 3707 aa13.82□□□□□ -0.2
VPS53-218ENST00000575207 A0A1W2PNR3 127 aa13.82□□□□□ -0.2
VPS53-218ENST00000575207 ZNF716A6NP11 495 aa13.82□□□□□ -0.2
VPS53-218ENST00000575207 SRRM5B3KS81 715 aa13.82□□□□□ -0.2
VPS53-218ENST00000575207 CECR9P0C854 216 aa13.82□□□□□ -0.2
VPS53-218ENST00000575207 SLC7A1P30825 629 aa13.82□□□□□ -0.2
VPS53-218ENST00000575207 KCNJ1P48048 391 aa13.82□□□□□ -0.2
VPS53-218ENST00000575207 ALDH9A1P49189 494 aa13.82□□□□□ -0.2
VPS53-218ENST00000575207 EVX1P49640 407 aa13.82□□□□□ -0.2
VPS53-218ENST00000575207 TAS2R39P59534 338 aa13.82□□□□□ -0.2
VPS53-218ENST00000575207 RPL15P61313 204 aaKnown RBP13.82□□□□□ -0.2
VPS53-218ENST00000575207 LIPJQ5W064 366 aa13.82□□□□□ -0.2
VPS53-218ENST00000575207 FAM205BPQ63HN1 556 aa13.82□□□□□ -0.2
VPS53-218ENST00000575207 PAGE2Q7Z2X7 111 aa13.82□□□□□ -0.2
VPS53-218ENST00000575207 GATSQ8NAP1 163 aa13.82□□□□□ -0.2
VPS53-218ENST00000575207 ATP6V1C2Q8NEY4 427 aa13.82□□□□□ -0.2
VPS53-218ENST00000575207 SH3YL1Q96HL8 342 aaPredicted RBP13.82□□□□□ -0.2
VPS53-218ENST00000575207 SOX21Q9Y651 276 aaPredicted RBP13.82□□□□□ -0.2
VPS53-218ENST00000575207 TET2Q6N021 2002 aaPredicted RBP13.81□□□□□ -0.2
VPS53-218ENST00000575207 K7EPI3 171 aa13.81□□□□□ -0.2
VPS53-218ENST00000575207 M0R233 179 aa13.81□□□□□ -0.2
VPS53-218ENST00000575207 MRPL33O75394 65 aaKnown RBP13.81□□□□□ -0.2
VPS53-218ENST00000575207 IGLV1-44P01699 117 aa13.81□□□□□ -0.2
VPS53-218ENST00000575207 NGFRP08138 427 aa13.81□□□□□ -0.2
VPS53-218ENST00000575207 TCN1P20061 433 aaPredicted RBP13.81□□□□□ -0.2
VPS53-218ENST00000575207 TIA1P31483 386 aaKnown RBP eCLIP13.81□□□□□ -0.2
VPS53-218ENST00000575207 MVKQ03426 396 aa13.81□□□□□ -0.2
VPS53-218ENST00000575207 OR4D1Q15615 310 aa13.81□□□□□ -0.2
VPS53-218ENST00000575207 SPANXN3Q5MJ09 141 aa13.81□□□□□ -0.2
VPS53-218ENST00000575207 AVPI1Q5T686 147 aa13.81□□□□□ -0.2
VPS53-218ENST00000575207 CCDC170Q8IYT3 715 aa13.81□□□□□ -0.2
VPS53-218ENST00000575207 OR7G2Q8NG99 324 aa13.81□□□□□ -0.2
VPS53-218ENST00000575207 FBXO27Q8NI29 283 aa13.81□□□□□ -0.2
VPS53-218ENST00000575207 EXT2Q93063 718 aa13.81□□□□□ -0.2
VPS53-218ENST00000575207 KTI12Q96EK9 354 aaPredicted RBP13.81□□□□□ -0.2
VPS53-218ENST00000575207 LACRTQ9GZZ8 138 aa13.81□□□□□ -0.2
VPS53-218ENST00000575207 SENP1Q9P0U3 644 aa13.81□□□□□ -0.2
VPS53-218ENST00000575207 FAM95CA0A1B0GW59 222 aa13.8□□□□□ -0.2
VPS53-218ENST00000575207 COQ9O75208 318 aa13.8□□□□□ -0.2
VPS53-218ENST00000575207 NCR1O76036 304 aa13.8□□□□□ -0.2
VPS53-218ENST00000575207 MPGP29372 298 aa13.8□□□□□ -0.2
VPS53-218ENST00000575207 LCN2P80188 198 aa13.8□□□□□ -0.2
VPS53-218ENST00000575207 CPSF6Q16630 551 aaKnown RBP eCLIP13.8□□□□□ -0.2
VPS53-218ENST00000575207 HIKESHIQ53FT3 197 aa13.8□□□□□ -0.2
VPS53-218ENST00000575207 KLHL22Q53GT1 634 aa13.8□□□□□ -0.2
VPS53-218ENST00000575207 OR4C3Q8NH37 302 aa13.8□□□□□ -0.2
VPS53-218ENST00000575207 WDR20Q8TBZ3 569 aa13.8□□□□□ -0.2
VPS53-218ENST00000575207 PHF21AQ96BD5 680 aa13.8□□□□□ -0.2
VPS53-218ENST00000575207 ARL5BQ96KC2 179 aa13.8□□□□□ -0.2
VPS53-218ENST00000575207 MRPL1Q9BYD6 325 aaKnown RBP13.8□□□□□ -0.2
VPS53-218ENST00000575207 SLC7A10Q9NS82 523 aa13.8□□□□□ -0.2
VPS53-218ENST00000575207 AHSPQ9NZD4 102 aa13.8□□□□□ -0.2
VPS53-218ENST00000575207 PURGQ9UJV8 347 aaKnown RBP13.8□□□□□ -0.2
VPS53-218ENST00000575207 GPR171O14626 319 aa13.79□□□□□ -0.2
VPS53-218ENST00000575207 OXSR1O95747 527 aaPredicted RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms