RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 ZNF474Q6S9Z5 364 aaPredicted RBP12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 ESPNLQ6ZVH7 1005 aa12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 ZNF550Q7Z398 422 aa12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 TOR1AIP2Q8NFQ8 470 aa12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 OR5W2Q8NH69 310 aa12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 ZFP90Q8TF47 636 aa12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 C10orf82Q8WW14 230 aa12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 OSTF1Q92882 214 aa12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 ZNF524Q96C55 264 aa12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 DNAJA3Q96EY1 480 aa12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 ADGRG7Q96K78 797 aa12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 KLHL4Q9C0H6 718 aa12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 ZNF350Q9GZX5 532 aa12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 PAIP1Q9H074 479 aaKnown RBP12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 C12orf49Q9H741 205 aa12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 MRGBPQ9NV56 204 aa12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 KLHL28Q9NXS3 571 aa12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 EMC9Q9Y3B6 208 aa12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 GPC6Q9Y625 555 aaPredicted RBP12.21□□□□□ -0.45
VPS9D1-204ENST00000565023 TACC2O95359 2948 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 A0A096LPI6 279 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 IGHV3-15A0A0B4J1V0 119 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 A0A1W2PNR3 127 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 C7orf72A4D263 438 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 EIF4E2O60573 245 aaKnown RBP12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 ANP32DO95626 131 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 KRT75O95678 551 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 LSP1P33241 339 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 RYKP34925 604 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 CD79BP40259 229 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 EIF1P41567 113 aaKnown RBP12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 MAGEA8P43361 318 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 MVDP53602 400 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 SEC24CP53992 1094 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 SUMO3P55854 103 aaPredicted RBP12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 CARD18P57730 90 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 TXNL4AP83876 142 aaKnown RBP12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 CHRNEQ04844 493 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 FUT5Q11128 374 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 SF3A3Q12874 501 aaKnown RBP eCLIP12.2□□□□□ -0.468e-9■■■□□ 17.5
VPS9D1-204ENST00000565023 CBFBQ13951 182 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 ZNF141Q15928 474 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 GTDC1Q4AE62 458 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 PAGE3Q5JUK9 113 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 C6orf10Q5SRN2 563 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 LRIF1Q5T3J3 769 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 AP1ARQ63HQ0 302 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 TYW3Q6IPR3 259 aaKnown RBP12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 FAM214BQ7L5A3 538 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 ZNF619Q8N2I2 560 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 ANKFN1Q8N957 763 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 TSPEARQ8WU66 669 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 REXO5Q96IC2 774 aaKnown RBP12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 SRXN1Q9BYN0 137 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 NMUR2Q9GZQ4 415 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 TPT1P8Q9HAU6 139 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 SAR1AQ9NR31 198 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 CCM2LQ9NUG4 571 aaPredicted RBP12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 FAM53CQ9NYF3 392 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 NDRG3Q9UGV2 375 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 PCDHB14Q9Y5E9 798 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 ABCA4P78363 2273 aa12.2□□□□□ -0.46
VPS9D1-204ENST00000565023 PRAMEF27A3QJZ7 478 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 CLDN24A6NM45 220 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 HMGN4O00479 90 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 ADAMDEC1O15204 470 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 KIAA0513O60268 411 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 BCAS1O75363 584 aaPredicted RBP12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 H6PDO95479 791 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 CGAP01215 116 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 GUSBP08236 651 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 SLC7A1P30825 629 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 ANXA11P50995 505 aaKnown RBP12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 MERTKQ12866 999 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 SKP2Q13309 424 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 DAZAP2Q15038 168 aaPredicted RBP12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 SYPL1Q16563 259 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 COX20Q5RI15 118 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 FRRS1Q6ZNA5 592 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 EIF3MQ7L2H7 374 aaKnown RBP12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 ZNF563Q8TA94 476 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 ABHD3Q8WU67 409 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 ZG16BQ96DA0 208 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 AURKBQ96GD4 344 aaPredicted RBP12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 GMPPAQ96IJ6 420 aaPredicted RBP12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 DACH2Q96NX9 599 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 WFIKKN1Q96NZ8 548 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 SLC39A3Q9BRY0 314 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 MED18Q9BUE0 208 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 LAT2Q9GZY6 243 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 PAQR5Q9NXK6 330 aaPredicted RBP12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 SLC25A37Q9NYZ2 338 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 C6orf203Q9P0P8 240 aaPredicted RBP12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 SLAMF8Q9P0V8 285 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 GMEB1Q9Y692 573 aa12.19□□□□□ -0.46
VPS9D1-204ENST00000565023 TRBV5-3A0A0A0MS03 114 aa12.18□□□□□ -0.46
VPS9D1-204ENST00000565023 FAM221AA4D161 298 aa12.18□□□□□ -0.46
VPS9D1-204ENST00000565023 GMNCA6NCL1 334 aa12.18□□□□□ -0.46
VPS9D1-204ENST00000565023 GJE1A6NN92 205 aa12.18□□□□□ -0.46
VPS9D1-204ENST00000565023 NTN1O95631 604 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms