RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 RAB8BQ92930 207 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 TMEM204Q9BSN7 226 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 CENPHQ9H3R5 247 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 GLRX2Q9NS18 164 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 ASIC5Q9NY37 505 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 LAMP3Q9UQV4 416 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 SERINC4A6NH21 518 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 GJE1A6NN92 205 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 RGS16O15492 202 aaPredicted RBP16.86■□□□□ 0.29
VPS35-202ENST00000561713 OR12D1P0DN82 309 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 PSMB1P20618 241 aaKnown RBP16.86■□□□□ 0.29
VPS35-202ENST00000561713 NME5P56597 212 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 PHC1P78364 1004 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 MAD2L1Q13257 205 aaPredicted RBP16.86■□□□□ 0.29
VPS35-202ENST00000561713 MAPK14Q16539 360 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 CLEC12BQ2HXU8 276 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 HEPHL1Q6MZM0 1159 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 HMBOX1Q6NT76 420 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 WDR93Q6P2C0 686 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 NATD1Q8N6N6 113 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 TOR1AIP2Q8NFQ8 470 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 AKAP1Q92667 903 aaKnown RBP eCLIP16.86■□□□□ 0.29
VPS35-202ENST00000561713 ZNF775Q96BV0 537 aaPredicted RBP16.86■□□□□ 0.29
VPS35-202ENST00000561713 MRGPRX4Q96LA9 322 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 OR5B2Q96R09 309 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 ZNF300Q96RE9 604 aaPredicted RBP16.86■□□□□ 0.29
VPS35-202ENST00000561713 THUMPD3Q9BV44 507 aaKnown RBP16.86■□□□□ 0.29
VPS35-202ENST00000561713 TMEM109Q9BVC6 243 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 NUF2Q9BZD4 464 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 DPY30Q9C005 99 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 NMUR2Q9GZQ4 415 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 ZNF350Q9GZX5 532 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 CR1P17927 2039 aa16.86■□□□□ 0.29
VPS35-202ENST00000561713 RNF212BA8MTL3 300 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 SMAD9O15198 467 aaKnown RBP16.85■□□□□ 0.29
VPS35-202ENST00000561713 KIAA0513O60268 411 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 TMCC2O75069 709 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 UGT2B17O75795 530 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 CSTAP01040 98 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 IL32P24001 234 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 ADH6P28332 368 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 CBFBQ13951 182 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 VEZF1Q14119 521 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 MPP2Q14168 576 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 RNPS1Q15287 305 aaKnown RBP16.85■□□□□ 0.29
VPS35-202ENST00000561713 TIGD2Q4W5G0 525 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 SPANXN4Q5MJ08 99 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 HOMEZQ8IX15 550 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 GABRG1Q8N1C3 465 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 MREGQ8N565 214 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 TIGARQ9NQ88 270 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 PRSS50Q9UI38 385 aa16.85■□□□□ 0.29
VPS35-202ENST00000561713 ING1Q9UK53 422 aaPredicted RBP16.85■□□□□ 0.29
VPS35-202ENST00000561713 RNASET2O00584 256 aaKnown RBP16.84■□□□□ 0.29
VPS35-202ENST00000561713 EIF4E2O60573 245 aaKnown RBP16.84■□□□□ 0.29
VPS35-202ENST00000561713 SCN2BO60939 215 aa16.84■□□□□ 0.29
VPS35-202ENST00000561713 STX11O75558 287 aa16.84■□□□□ 0.29
VPS35-202ENST00000561713 PABPC4LP0CB38 370 aaKnown RBP16.84■□□□□ 0.29
VPS35-202ENST00000561713 DHRS4L1P0CG22 281 aa16.84■□□□□ 0.29
VPS35-202ENST00000561713 SLC1A6P48664 564 aa16.84■□□□□ 0.29
VPS35-202ENST00000561713 RPS4XP62701 263 aaKnown RBP16.84■□□□□ 0.29
VPS35-202ENST00000561713 MERTKQ12866 999 aa16.84■□□□□ 0.29
VPS35-202ENST00000561713 TAB1Q15750 504 aa16.84■□□□□ 0.29
VPS35-202ENST00000561713 ZNF141Q15928 474 aa16.84■□□□□ 0.29
VPS35-202ENST00000561713 SLC25A53Q5H9E4 307 aa16.84■□□□□ 0.29
VPS35-202ENST00000561713 C3orf33Q6P1S2 294 aa16.84■□□□□ 0.29
VPS35-202ENST00000561713 BHLHB9Q6PI77 547 aa16.84■□□□□ 0.29
VPS35-202ENST00000561713 PHC2Q8IXK0 858 aa16.84■□□□□ 0.29
VPS35-202ENST00000561713 LILRB1Q8NHL6 650 aaPredicted RBP16.84■□□□□ 0.29
VPS35-202ENST00000561713 NEUROG1Q92886 237 aa16.84■□□□□ 0.29
VPS35-202ENST00000561713 PSD2Q9BQI7 771 aa16.84■□□□□ 0.29
VPS35-202ENST00000561713 TACO1Q9BSH4 297 aaKnown RBP16.84■□□□□ 0.29
VPS35-202ENST00000561713 PNPOQ9NVS9 261 aa16.84■□□□□ 0.29
VPS35-202ENST00000561713 GPR52Q9Y2T5 361 aa16.84■□□□□ 0.29
VPS35-202ENST00000561713 RAP2CQ9Y3L5 183 aa16.84■□□□□ 0.29
VPS35-202ENST00000561713 CLDN24A6NM45 220 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 ANKRD28O15084 1053 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 CLOCKO15516 846 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 PRKD3O94806 890 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 ADAP00813 363 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 FESP07332 822 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 MYZAPP0CAP1 466 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 SESN3P58005 492 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 PLAURQ03405 335 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 ARHGAP11BQ3KRB8 267 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 CEP85LQ5SZL2 805 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 GTF2IRD2BQ6EKJ0 949 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 TYW3Q6IPR3 259 aaKnown RBP16.83■□□□□ 0.28
VPS35-202ENST00000561713 FRRS1Q6ZNA5 592 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 GTF2IRD2Q86UP8 949 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 OR8J2Q8NGG1 315 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 PAIP2Q9BPZ3 127 aaKnown RBP16.83■□□□□ 0.28
VPS35-202ENST00000561713 PARD6BQ9BYG5 372 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 REG4Q9BYZ8 158 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 LAT2Q9GZY6 243 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 FANCFQ9NPI8 374 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 WDR45Q9Y484 360 aa16.83■□□□□ 0.28
VPS35-202ENST00000561713 NBEAL1Q6ZS30 2694 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 PRAMEF27A3QJZ7 478 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 ZNF814B7Z6K7 855 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms