RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-225ENST00000561391 CRLS1Q9UJA2 301 aa2.91□□□□□ -1.94
SPG11-225ENST00000561391 SLC13A4Q9UKG4 626 aa2.91□□□□□ -1.94
SPG11-225ENST00000561391 ICKQ9UPZ9 632 aa2.91□□□□□ -1.94
SPG11-225ENST00000561391 EIF3LQ9Y262 564 aaKnown RBP2.91□□□□□ -1.94
SPG11-225ENST00000561391 ANGPTL3Q9Y5C1 460 aa2.91□□□□□ -1.94
SPG11-225ENST00000561391 PCDHGB1Q9Y5G3 927 aa2.91□□□□□ -1.94
SPG11-225ENST00000561391 SEC23IPQ9Y6Y8 1000 aaKnown RBP2.91□□□□□ -1.94
SPG11-225ENST00000561391 ANKRD12Q6UB98 2062 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 A0A0A0MQY5 61 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 TRBV5-3A0A0A0MS03 114 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 NSG1A0A0A6YYJ2 146 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 TRBV5-4A0A0C4DH59 114 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 A0A1W2PP18 115 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 TSPAN11A1L157 253 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 TMEM89A2RUT3 159 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 OR6C68A6NDL8 312 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 TMEM247A6NEH6 219 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 FAM90A7PA6NKC0 464 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 OR52A4PA6NMU1 304 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 PDZK1P1A8MUH7 402 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 FAM90A22PA8MWA6 464 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 FAM90A12PA8MX19 464 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 FAM90A23PA8MXZ1 464 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 NPIPA2E9PIF3 369 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 NPIPA3F8WFD2 350 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 K7EPI3 171 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 SDHDO14521 159 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 GAPDHSO14556 408 aaPredicted RBP2.9□□□□□ -1.95
SPG11-225ENST00000561391 CASQ2O14958 399 aaPredicted RBP2.9□□□□□ -1.95
SPG11-225ENST00000561391 SLC25A17O43808 307 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 VEGFDO43915 354 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 LMX1BO60663 402 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 STK16O75716 305 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 SLC22A3O75751 556 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 BCAS2O75934 225 aaPredicted RBP2.9□□□□□ -1.95
SPG11-225ENST00000561391 CDK14O94921 469 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 SLC25A14O95258 325 aaPredicted RBP2.9□□□□□ -1.95
SPG11-225ENST00000561391 BAG2O95816 211 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 HPP00738 406 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 KRT6AP02538 564 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 SLC4A1P02730 911 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 FTH1P02794 183 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 KRT6BP04259 564 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 ANXA5P08758 320 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 MPC1LP0DKB6 136 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 UMPSP11172 480 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 FCGR1AP12314 374 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 DDX5P17844 614 aaKnown RBP2.9□□□□□ -1.95
SPG11-225ENST00000561391 ITGAXP20702 1163 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 CDH3P22223 829 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 IL10P22301 178 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 ARRB2P32121 409 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 HSD17B2P37059 387 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 RFC3P40938 356 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 KRT6CP48668 564 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 COMPP49747 757 aaPredicted RBP2.9□□□□□ -1.95
SPG11-225ENST00000561391 NR0B1P51843 470 aaKnown RBP2.9□□□□□ -1.95
SPG11-225ENST00000561391 EFNA3P52797 238 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 CDH15P55291 814 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 DCDC1P59894 354 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 PSME3P61289 254 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 ERVK-8P63133 956 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 EMX2Q04743 252 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 KLC1Q07866 573 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 LRRC74AQ0VAA2 488 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 TRAF2Q12933 501 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 DLG1Q12959 904 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 BNIP2Q12982 314 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 FLOT2Q14254 428 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 SEMA3AQ14563 771 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 IHHQ14623 411 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 TGFBIQ15582 683 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 OR4D1Q15615 310 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 TSNQ15631 228 aaKnown RBP2.9□□□□□ -1.95
SPG11-225ENST00000561391 UGT3A2Q3SY77 523 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 NKAIN1Q4KMZ8 207 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 SLC9B1Q4ZJI4 515 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 ATP6AP1LQ52LC2 224 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 AGKQ53H12 422 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 ACSBG2Q5FVE4 666 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 PIGGQ5H8A4 983 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 PIK3CD-AS1Q5SR53 167 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 C6orf10Q5SRN2 563 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 LDLRAP1Q5SW96 308 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 FAM120AOSQ5T036 256 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 C10orf25Q5T742 122 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 PXDC1Q5TGL8 231 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 GARNL3Q5VVW2 1013 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 MORN5Q5VZ52 161 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 LRRC74BQ6ZQY2 392 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 RFLNAQ6ZTI6 216 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 HSD11B1LQ7Z5J1 315 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 C1QL2Q7Z5L3 287 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 DHDDSQ86SQ9 333 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 LDB1Q86U70 411 aaPredicted RBP2.9□□□□□ -1.95
SPG11-225ENST00000561391 SERPINA9Q86WD7 417 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 SNX32Q86XE0 403 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 DHFR2Q86XF0 187 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 PRSS58Q8IYP2 241 aa2.9□□□□□ -1.95
SPG11-225ENST00000561391 SPATA6LQ8N4H0 392 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms