RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 SLC43A2Q8N370 569 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 TMCO5AQ8N6Q1 288 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 ITCHQ96J02 903 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 THUMPD3Q9BV44 507 aaKnown RBP14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 OPN3Q9H1Y3 402 aaPredicted RBP14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 MTHFD2LQ9H903 347 aaPredicted RBP14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 TCF7L2Q9NQB0 619 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 ST6GALNAC2Q9UJ37 374 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 GMEB1Q9Y692 573 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 DSPPQ9NZW4 1301 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 F8P00451 2351 aa14.33□□□□□ -0.11
CCDC88C-209ENST00000554872 ABCA4P78363 2273 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 C16orf97H3BN30 126 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 POLR3GO15318 223 aaPredicted RBP14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 PLGP00747 810 aaPredicted RBP14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 C1QCP02747 245 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 CHRM4P08173 479 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 UBTFL6P0CB48 400 aaPredicted RBP14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 POU2F1P14859 743 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 CD1EP15812 388 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 PPP3CBP16298 524 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 HOXB9P17482 250 aaPredicted RBP14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 APOBEC1P41238 236 aaKnown RBP14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 CCR4P51679 360 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 POLR2JP52435 117 aaKnown RBP14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 CTBP2P56545 445 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 SESN3P58005 492 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 FAM27E3Q08E93 113 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 GPAT3Q53EU6 434 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 PLEKHM3Q6ZWE6 761 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 ZNF610Q8N9Z0 462 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 ZG16BQ96DA0 208 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 MBD6Q96DN6 1003 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 FOXC2Q99958 501 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 CCDC106Q9BWC9 280 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 SRXN1Q9BYN0 137 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 SLCO1B3Q9NPD5 702 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 FANCFQ9NPI8 374 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 SERINC1Q9NRX5 453 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 SLC6A13Q9NSD5 602 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 CALML5Q9NZT1 146 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 KLHL13Q9P2N7 655 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 P2RX2Q9UBL9 471 aa14.33□□□□□ -0.12
CCDC88C-209ENST00000554872 MPDZO75970 2070 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 DNPH1O43598 174 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 BMP2P12643 396 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 CRYGSP22914 178 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 SLC7A1P30825 629 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 CLK1P49759 484 aaKnown RBP14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 IDH3AP50213 366 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 RNF144AP50876 292 aaPredicted RBP14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 ATP4BP51164 291 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 MAP2K6P52564 334 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 GNA13Q14344 377 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 MAPK11Q15759 364 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 SYPL1Q16563 259 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 ZSWIM7Q19AV6 140 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 TMEM176BQ3YBM2 270 aaPredicted RBP14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 TIGD2Q4W5G0 525 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 COX20Q5RI15 118 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 PAMR1Q6UXH9 720 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 OLIG3Q7RTU3 272 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 GRINAQ7Z429 371 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 ARFGAP2Q8N6H7 521 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 ANKFN1Q8N957 763 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 OR9I1Q8NGQ6 314 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 RFWD2Q8NHY2 731 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 GTF2H4Q92759 462 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 REXO5Q96IC2 774 aaKnown RBP14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 MARK4Q96L34 752 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 PLEKHF2Q9H8W4 249 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 TPT1P8Q9HAU6 139 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 BCO1Q9HAY6 547 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 ZNF226Q9NYT6 803 aa14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 SPIN1Q9Y657 262 aaPredicted RBP14.32□□□□□ -0.12
CCDC88C-209ENST00000554872 CASKO14936 926 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 BCAS1O75363 584 aaPredicted RBP14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 PRKD3O94806 890 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 OPN1LWP04000 364 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 GSNP06396 782 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 DBIP07108 87 aaKnown RBP14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 PSMB1P20618 241 aaKnown RBP14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 HTR3AP46098 478 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 STX1BP61266 288 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 PPP2R2AP63151 447 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 FADDQ13158 208 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 SYT14P1Q58G82 188 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 LRIF1Q5T3J3 769 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 PRAMEF8Q5VWM4 474 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 PRAMEF7Q5VXH5 474 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 BEND4Q6ZU67 534 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 FCRLAQ7L513 359 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 STK32CQ86UX6 486 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 ZNF440Q8IYI8 595 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 GOLGA6L1Q8N7Z2 621 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 ABHD3Q8WU67 409 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 WFIKKN1Q96NZ8 548 aa14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 PAIP1Q9H074 479 aaKnown RBP14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 INTS9Q9NV88 658 aaKnown RBP14.31□□□□□ -0.12
CCDC88C-209ENST00000554872 KLHL9Q9P2J3 617 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms