RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 C12orf42Q96LP6 360 aa4.74□□□□□ -1.65
SCFD1-208ENST00000553278 C20orf24Q9BUV8 137 aa4.74□□□□□ -1.65
SCFD1-208ENST00000553278 OCR1Q9BZK8 76 aa4.74□□□□□ -1.65
SCFD1-208ENST00000553278 DNTTIP1Q9H147 329 aa4.74□□□□□ -1.65
SCFD1-208ENST00000553278 SMYD3Q9H7B4 428 aa4.74□□□□□ -1.65
SCFD1-208ENST00000553278 FGF22Q9HCT0 170 aa4.74□□□□□ -1.65
SCFD1-208ENST00000553278 NANSQ9NR45 359 aa4.74□□□□□ -1.65
SCFD1-208ENST00000553278 MRPL22Q9NWU5 206 aaKnown RBP4.74□□□□□ -1.65
SCFD1-208ENST00000553278 FAM120CQ9NX05 1096 aaKnown RBP4.74□□□□□ -1.65
SCFD1-208ENST00000553278 WRAP73Q9P2S5 460 aaPredicted RBP4.74□□□□□ -1.65
SCFD1-208ENST00000553278 PITPNC1Q9UKF7 332 aa4.74□□□□□ -1.65
SCFD1-208ENST00000553278 WDR81Q562E7 1941 aa4.74□□□□□ -1.65
SCFD1-208ENST00000553278 IGHV3OR16-12A0A075B7B8 117 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 GOLGA8TH3BQL2 631 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 SPOPO43791 374 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 PFKFB2O60825 505 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 H2AFZP0C0S5 128 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 RHOXF2BP0C7M4 288 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 POLR2EP19388 210 aaKnown RBP4.73□□□□□ -1.65
SCFD1-208ENST00000553278 IGFBP5P24593 272 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 ACVR1BP36896 505 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 QARSP47897 775 aaKnown RBP4.73□□□□□ -1.65
SCFD1-208ENST00000553278 PUDPQ08623 228 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 CUL1Q13616 776 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 KLHL40Q2TBA0 621 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 TRIM16LQ309B1 348 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 FAM120AOSQ5T036 256 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 ARMCX5Q6P1M9 558 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 SSX9Q7RTT3 188 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 PDCL2Q8N4E4 241 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 AQP11Q8NBQ7 271 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 OR9A4Q8NGU2 314 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 SSC4DQ8WTU2 575 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 TAF15Q92804 592 aaKnown RBP eCLIP4.73□□□□□ -1.65
SCFD1-208ENST00000553278 ZNF501Q96CX3 271 aaPredicted RBP4.73□□□□□ -1.65
SCFD1-208ENST00000553278 TMEM80Q96HE8 168 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 ZNF578Q96N58 590 aaPredicted RBP4.73□□□□□ -1.65
SCFD1-208ENST00000553278 NODALQ96S42 347 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 MAPKAP1Q9BPZ7 522 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 RHOXF2Q9BQY4 288 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 NAT10Q9H0A0 1025 aaKnown RBP4.73□□□□□ -1.65
SCFD1-208ENST00000553278 AMBNQ9NP70 447 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 ZNF446Q9NWS9 450 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 NUDT4Q9NZJ9 180 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 THAP10Q9P2Z0 257 aaPredicted RBP4.73□□□□□ -1.65
SCFD1-208ENST00000553278 PACSIN2Q9UNF0 486 aaPredicted RBP4.73□□□□□ -1.65
SCFD1-208ENST00000553278 STARD10Q9Y365 291 aa4.73□□□□□ -1.65
SCFD1-208ENST00000553278 TRBV11-1A0A0K0K1C0 115 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 PP2D1A8MPX8 630 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 FOXI3A8MTJ6 420 aaPredicted RBP4.72□□□□□ -1.65
SCFD1-208ENST00000553278 E7ESA3 106 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 PES1O00541 588 aaKnown RBP4.72□□□□□ -1.65
SCFD1-208ENST00000553278 CXCL13O43927 109 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 SNAP91O60641 907 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 OTCP00480 354 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 ZSCAN5DPP0CG00 497 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 BCL3P20749 454 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 ZNF10P21506 573 aaPredicted RBP4.72□□□□□ -1.65
SCFD1-208ENST00000553278 CDKN1BP46527 198 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 ACLYP53396 1101 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 HSPA2P54652 639 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 VLDLRP98155 873 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 CCL14Q16627 93 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 AADACL4Q5VUY2 407 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 SLC8B1Q6J4K2 584 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 C16orf87Q6PH81 154 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 LRRC31Q6UY01 552 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 CATSPER3Q86XQ3 398 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 ERI1Q8IV48 349 aaKnown RBP4.72□□□□□ -1.65
SCFD1-208ENST00000553278 FAM76AQ8TAV0 307 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 TCTEX1D2Q8WW35 142 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 FAF2Q96CS3 445 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 GSDMAQ96QA5 445 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 WACQ9BTA9 647 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 STMN4Q9H169 189 aaPredicted RBP4.72□□□□□ -1.65
SCFD1-208ENST00000553278 ZNF385DQ9H6B1 395 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 CHRAC1Q9NRG0 131 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 CUTCQ9NTM9 273 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 HOXC10Q9NYD6 342 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 PDP1Q9P0J1 537 aaPredicted RBP4.72□□□□□ -1.65
SCFD1-208ENST00000553278 PHF11Q9UIL8 331 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 VANGL2Q9ULK5 521 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 COPS3Q9UNS2 423 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 RNF24Q9Y225 148 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 TNIKQ9UKE5 1360 aa4.72□□□□□ -1.65
SCFD1-208ENST00000553278 IGLV4-3A0A075B6K6 122 aa4.71□□□□□ -1.66
SCFD1-208ENST00000553278 IQANK1A0A1B0GTG1 560 aa4.71□□□□□ -1.66
SCFD1-208ENST00000553278 A8MXQ7 604 aa4.71□□□□□ -1.66
SCFD1-208ENST00000553278 TRDCB7Z8K6 153 aa4.71□□□□□ -1.66
SCFD1-208ENST00000553278 AKR7A2O43488 359 aa4.71□□□□□ -1.66
SCFD1-208ENST00000553278 OR10H3O60404 316 aa4.71□□□□□ -1.66
SCFD1-208ENST00000553278 NEMFO60524 1076 aa4.71□□□□□ -1.66
SCFD1-208ENST00000553278 TMEM50AO95807 157 aa4.71□□□□□ -1.66
SCFD1-208ENST00000553278 GAPDHP04406 335 aaKnown RBP4.71□□□□□ -1.66
SCFD1-208ENST00000553278 SERPINB2P05120 415 aa4.71□□□□□ -1.66
SCFD1-208ENST00000553278 SERPIND1P05546 499 aa4.71□□□□□ -1.66
SCFD1-208ENST00000553278 HCKP08631 526 aa4.71□□□□□ -1.66
SCFD1-208ENST00000553278 ZNF24P17028 368 aa4.71□□□□□ -1.66
SCFD1-208ENST00000553278 KITLGP21583 273 aa4.71□□□□□ -1.66
SCFD1-208ENST00000553278 FGF9P31371 208 aaPredicted RBP4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms