RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 FAM26EQ8N5C1 309 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 HAVCR1Q96D42 359 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 TRIM2Q9C040 744 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 RGCCQ9H4X1 137 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 COPS7AQ9UBW8 275 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 MAGEB4O15481 346 aaPredicted RBP13.3□□□□□ -0.28
LIMS1-215ENST00000544547 VNN2O95498 520 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 SCGB1D2O95969 90 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 GKN3PP0CG01 181 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 HSD17B2P37059 387 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 ADGRG3Q86Y34 549 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 OR13C5Q8NGS8 318 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 OR52D1Q9H346 318 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 SRA1Q9HD15 236 aaKnown RBP13.3□□□□□ -0.28
LIMS1-215ENST00000544547 KCNK6Q9Y257 313 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 AGAP14A8MT82 685 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 HEPACAM2A8MVW5 462 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 DCNP07585 359 aaKnown RBP13.3□□□□□ -0.28
LIMS1-215ENST00000544547 BTN3A2P78410 334 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 KIAA0040Q15053 153 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 CNKSR3Q6P9H4 555 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 OR4N5Q8IXE1 308 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 OR5T2Q8NGG2 359 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 TCTEX1D2Q8WW35 142 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 KCTD12Q96CX2 325 aaKnown RBP13.3□□□□□ -0.28
LIMS1-215ENST00000544547 HEBP2Q9Y5Z4 205 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 F5P12259 2224 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 LTBP4Q8N2S1 1624 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 NAP1L6A6NFF2 107 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 ACOT7O00154 380 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 OIP5O43482 229 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 SOCS5O75159 536 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 ETHE1O95571 254 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 UGT2B7P16662 529 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 ZP3P21754 424 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 IL12BP29460 328 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 LIM2P55344 173 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 TPBGQ13641 420 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 CDNFQ49AH0 187 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 GPR139Q6DWJ6 353 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 OR56A1Q8NGH5 318 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 EIF5A2Q9GZV4 153 aaKnown RBP13.3□□□□□ -0.28
LIMS1-215ENST00000544547 CST11Q9H112 138 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 POMT2Q9UKY4 750 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 BACE2Q9Y5Z0 518 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 SSC5DA1L4H1 1573 aa13.3□□□□□ -0.28
LIMS1-215ENST00000544547 IGLV3-10A0A075B6K4 115 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 SNRNP70P08621 437 aaKnown RBP13.29□□□□□ -0.28
LIMS1-215ENST00000544547 FURINP09958 794 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 CTSOP43234 321 aaPredicted RBP13.29□□□□□ -0.28
LIMS1-215ENST00000544547 CTSCP53634 463 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 LGALSLQ3ZCW2 172 aaPredicted RBP13.29□□□□□ -0.28
LIMS1-215ENST00000544547 H3F3CQ6NXT2 135 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 DUSP18Q8NEJ0 188 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 BBS1Q8NFJ9 593 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 OR2L2Q8NH16 312 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 OR52I2Q8NH67 350 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 NXF2Q9GZY0 626 aaKnown RBP13.29□□□□□ -0.28
LIMS1-215ENST00000544547 TMEM231Q9H6L2 316 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 CLDND1Q9NY35 253 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 LINC00862A6NCI5 91 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 WDPCPO95876 746 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 SOD1P00441 154 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 UBBP0CG47 229 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 UBCP0CG48 685 aaKnown RBP13.29□□□□□ -0.28
LIMS1-215ENST00000544547 NDUFS1P28331 727 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 SLC6A6P31641 620 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 DYRK1AQ13627 763 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 IHHQ14623 411 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 AVPI1Q5T686 147 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 AFMIDQ63HM1 303 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 ZNF322Q6U7Q0 402 aaPredicted RBP13.29□□□□□ -0.28
LIMS1-215ENST00000544547 PRICKLE2Q7Z3G6 844 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 OR11H7Q8NGC8 314 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 ORAI1Q96D31 301 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 OR14A2Q96R54 314 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 PLEKHA1Q9HB21 404 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 MKKSQ9NPJ1 570 aaPredicted RBP13.29□□□□□ -0.28
LIMS1-215ENST00000544547 SCML1Q9UN30 329 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 LRRC37AA6NMS7 1700 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 QSER1Q2KHR3 1735 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 SNAPINO95295 136 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 ZNF30P17039 623 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 MVDP53602 400 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 ZNF616Q08AN1 781 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 PEA15Q15121 130 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 CHST14Q8NCH0 376 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 SDR9C7Q8NEX9 313 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 OR52B4Q8NGK2 314 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 OR56A3Q8NH54 315 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 MICU1Q9BPX6 476 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 ALKBH4Q9NXW9 302 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 KNTC1P50748 2209 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 TRAV27A0A087WT01 109 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 ZNF593O00488 134 aaPredicted RBP13.29□□□□□ -0.28
LIMS1-215ENST00000544547 UGDHO60701 494 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 SFTPBP07988 381 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 ZNF823P16415 610 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 LSSP48449 732 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 PFN3P60673 137 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms