RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	OR52D1	Q9H346	318 aa		11.59	□□□□□ -0.55
RNF4-222	ENST00000541204	TEKT2	Q9UIF3	430 aa		11.59	□□□□□ -0.55
RNF4-222	ENST00000541204	MMP17	Q9ULZ9	603 aa		11.59	□□□□□ -0.55
RNF4-222	ENST00000541204	RASD1	Q9Y272	281 aa		11.59	□□□□□ -0.55
RNF4-222	ENST00000541204	SYNDIG1L	A6NDD5	238 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	FABP7	O15540	132 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	EEF1E1	O43324	174 aa	Known RBP	11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	OR5F1	O95221	314 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	THEGL	P0DJG4	465 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	CTSE	P14091	401 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	TLX1	P31314	330 aa	Predicted RBP	11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	THBS2	P35442	1172 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	TSFM	P43897	325 aa	Known RBP	11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	OR3A3	P47888	321 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	FXYD6P3	P58550	94 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	ARPC4	P59998	168 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	C19orf57	Q0VDD7	668 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	EXOSC7	Q15024	291 aa	Known RBP	11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	FCN2	Q15485	313 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	DUSP5	Q16690	384 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	MFSD12	Q6NUT3	480 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	NIPAL3	Q6P499	406 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	ZNF836	Q6ZNA1	936 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	GPR135	Q8IZ08	494 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	OR10H4	Q8NGA5	316 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	OR5W2	Q8NH69	310 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	SMAP2	Q8WU79	429 aa	Predicted RBP	11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	RSC1A1	Q92681	617 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	SERINC2	Q96SA4	455 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	JAM3	Q9BX67	310 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	TDRD6	O60522	2096 aa	Known RBP	11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	DAPL1	A0PJW8	107 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	TNFRSF10C	O14798	259 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	FGF17	O60258	216 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	MRPL3	P09001	348 aa	Known RBP	11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	NT5E	P21589	574 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	GAL	P22466	123 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	PITPNB	P48739	271 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	SLC16A1	P53985	500 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	CCIN	Q13939	588 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	PLA1A	Q53H76	456 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	ZC3H14	Q6PJT7	736 aa	Known RBP	11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	MEPCE	Q7L2J0	689 aa	Known RBP	11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	PFN4	Q8NHR9	129 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	NT5C	Q8TCD5	201 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	TM4SF19	Q96DZ7	209 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	CCDC3	Q9BQI4	270 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	SYNDIG1	Q9H7V2	258 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	ATP13A2	Q9NQ11	1180 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	C20orf141	Q9NUB4	165 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	FBXO34	Q9NWN3	711 aa		11.58	□□□□□ -0.56
RNF4-222	ENST00000541204	FANCM	Q8IYD8	2048 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	SHISA7	A6NL88	538 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	C2orf74	A8MZ97	194 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	CHP2	O43745	196 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	PRG2	P13727	222 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	BTC	P35070	178 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	E2F1	Q01094	437 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	BDH1	Q02338	343 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	SLC3A1	Q07837	685 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	BICRAL	Q6AI39	1079 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	FCRLB	Q6BAA4	426 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	SFXN4	Q6P4A7	337 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	WDR88	Q6ZMY6	472 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	ABHD13	Q7L211	337 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	OAF	Q86UD1	273 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	GID4	Q8IVV7	300 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	TIGD4	Q8IY51	512 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	C9orf62	Q8N4C0	152 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	BMPER	Q8N8U9	685 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	CAMKV	Q8NCB2	501 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	FANK1	Q8TC84	345 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	HYLS1	Q96M11	299 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	ABHD1	Q96SE0	405 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	SMAD5	Q99717	465 aa	Known RBP	11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	C8orf33	Q9H7E9	229 aa	Predicted RBP	11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	TRIM36	Q9NQ86	728 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	PHF11	Q9UIL8	331 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	PILRA	Q9UKJ1	303 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	CLEC4A	Q9UMR7	237 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	WDR45	Q9Y484	360 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	UNC119B	A6NIH7	251 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	CDC123	O75794	336 aa	Predicted RBP	11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	GKN3P	P0CG01	181 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	CPM	P14384	443 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	MAK	P20794	623 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	SDHB	P21912	280 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	AHCY	P23526	432 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	RPS7	P62081	194 aa	Known RBP	11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	EIF2B5	Q13144	721 aa	Known RBP	11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	RNASE12	Q5GAN4	147 aa	Known RBP	11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	HEPHL1	Q6MZM0	1159 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	CDC73	Q6P1J9	531 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	FIGNL1	Q6PIW4	674 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	RPTN	Q6XPR3	784 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	RFPL4B	Q6ZWI9	263 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	ZNF767P	Q75MW2	155 aa		11.57	□□□□□ -0.56
RNF4-222	ENST00000541204	MS4A4E	Q96PG1	132 aa		11.57	□□□□□ -0.56

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