RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 PLSCR4Q9NRQ2 329 aa18.46■□□□□ 0.55
VPS28-206ENST00000526734 AGAP5A6NIR3 686 aa18.45■□□□□ 0.54
VPS28-206ENST00000526734 CASKO14936 926 aa18.45■□□□□ 0.54
VPS28-206ENST00000526734 EFNA2O43921 213 aa18.45■□□□□ 0.54
VPS28-206ENST00000526734 OPN1LWP04000 364 aa18.45■□□□□ 0.54
VPS28-206ENST00000526734 POU2F1P14859 743 aa18.45■□□□□ 0.54
VPS28-206ENST00000526734 IDH3AP50213 366 aa18.45■□□□□ 0.54
VPS28-206ENST00000526734 TMEM176BQ3YBM2 270 aaPredicted RBP18.45■□□□□ 0.54
VPS28-206ENST00000526734 C6orf10Q5SRN2 563 aa18.45■□□□□ 0.54
VPS28-206ENST00000526734 FBXW10Q5XX13 1052 aa18.45■□□□□ 0.54
VPS28-206ENST00000526734 ZNF474Q6S9Z5 364 aaPredicted RBP18.45■□□□□ 0.54
VPS28-206ENST00000526734 DNAJC14Q6Y2X3 702 aaPredicted RBP18.45■□□□□ 0.54
VPS28-206ENST00000526734 STK32CQ86UX6 486 aa18.45■□□□□ 0.54
VPS28-206ENST00000526734 SLC43A2Q8N370 569 aa18.45■□□□□ 0.54
VPS28-206ENST00000526734 ARFGAP2Q8N6H7 521 aa18.45■□□□□ 0.54
VPS28-206ENST00000526734 ANKFN1Q8N957 763 aa18.45■□□□□ 0.54
VPS28-206ENST00000526734 TESMINQ9Y4I5 508 aa18.45■□□□□ 0.54
VPS28-206ENST00000526734 PRAMEF27A3QJZ7 478 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 TMEM247A6NEH6 219 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 C16orf97H3BN30 126 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 DBIP07108 87 aaKnown RBP18.44■□□□□ 0.54
VPS28-206ENST00000526734 CHRM4P08173 479 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 NID1P14543 1247 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 RPS4Y1P22090 263 aaKnown RBP18.44■□□□□ 0.54
VPS28-206ENST00000526734 SHC1P29353 583 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 APOBEC1P41238 236 aaKnown RBP18.44■□□□□ 0.54
VPS28-206ENST00000526734 KCNJ5P48544 419 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 ATP4BP51164 291 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 SESN3P58005 492 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 RAC3P60763 192 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 SYPL1Q16563 259 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 ZSWIM7Q19AV6 140 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 OLIG3Q7RTU3 272 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 PEX5LQ8IYB4 626 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 OR9I1Q8NGQ6 314 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 ZNF563Q8TA94 476 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 CKAP2Q8WWK9 683 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 MAGEB18Q96M61 343 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 COQ10BQ9H8M1 238 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 TPT1P8Q9HAU6 139 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 ZNF226Q9NYT6 803 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 POLQO75417 2590 aa18.44■□□□□ 0.54
VPS28-206ENST00000526734 FAAHO00519 579 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 UQCRBP14927 111 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 CRATP43155 626 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 HTR3AP46098 478 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 MVDP53602 400 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 CRISP3P54108 245 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 AQP5P55064 265 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 DSTNP60981 165 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 FAM27E3Q08E93 113 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 MERTKQ12866 999 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 COX20Q5RI15 118 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 PLEKHM3Q6ZWE6 761 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 GRINAQ7Z429 371 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 CDC20BQ86Y33 519 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 ZNF440Q8IYI8 595 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 ZNF610Q8N9Z0 462 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 PNPT1Q8TCS8 783 aaKnown RBP18.43■□□□□ 0.54
VPS28-206ENST00000526734 WDR60Q8WVS4 1066 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 GTF2H4Q92759 462 aa18.43■□□□□ 0.54
VPS28-206ENST00000526734 CACYBPQ9HB71 228 aaKnown RBP18.43■□□□□ 0.54
VPS28-206ENST00000526734 ANKRD17O75179 2603 aaKnown RBP18.43■□□□□ 0.54
VPS28-206ENST00000526734 PRKD3O94806 890 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 PPP3CBP16298 524 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 IL7RP16871 459 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 AGTR1P30556 359 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 DNAJA1P31689 397 aaKnown RBP18.42■□□□□ 0.54
VPS28-206ENST00000526734 UGT2B10P36537 528 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 CLK1P49759 484 aaKnown RBP18.42■□□□□ 0.54
VPS28-206ENST00000526734 CSNK2A1P68400 391 aaPredicted RBP18.42■□□□□ 0.54
VPS28-206ENST00000526734 FADDQ13158 208 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 TMEM201Q5SNT2 666 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 BEND4Q6ZU67 534 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 FCRLAQ7L513 359 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 ATP6V1C2Q8NEY4 427 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 VPS33AQ96AX1 596 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 SIKE1Q9BRV8 207 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 SRXN1Q9BYN0 137 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 OR10A4Q9H209 315 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 RABEP2Q9H5N1 569 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 SLC6A13Q9NSD5 602 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 KLHL9Q9P2J3 617 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 KLHL13Q9P2N7 655 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 ITGB1BP2Q9UKP3 347 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 CLEC4AQ9UMR7 237 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 DSPPQ9NZW4 1301 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 TACC2O95359 2948 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 CCDC168Q8NDH2 2452 aa18.42■□□□□ 0.54
VPS28-206ENST00000526734 OTOGQ6ZRI0 2925 aa18.41■□□□□ 0.54
VPS28-206ENST00000526734 A0A096LPI6 279 aa18.41■□□□□ 0.54
VPS28-206ENST00000526734 PPIBP23284 216 aaKnown RBP18.41■□□□□ 0.54
VPS28-206ENST00000526734 MAP2K6P52564 334 aa18.41■□□□□ 0.54
VPS28-206ENST00000526734 LIN52Q52LA3 116 aa18.41■□□□□ 0.54
VPS28-206ENST00000526734 SYT14P1Q58G82 188 aa18.41■□□□□ 0.54
VPS28-206ENST00000526734 PRAMEF8Q5VWM4 474 aa18.41■□□□□ 0.54
VPS28-206ENST00000526734 PRAMEF7Q5VXH5 474 aa18.41■□□□□ 0.54
VPS28-206ENST00000526734 BLOC1S3Q6QNY0 202 aa18.41■□□□□ 0.54
VPS28-206ENST00000526734 ZNF524Q96C55 264 aa18.41■□□□□ 0.54
VPS28-206ENST00000526734 ZG16BQ96DA0 208 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms