RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 ZNF19P17023 458 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 MAPK3P27361 379 aaPredicted RBP16.45■□□□□ 0.22
NUP54-205ENST00000507257 TEAD1P28347 426 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 S100A11P31949 105 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 FOXK2Q01167 660 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 PRKCZQ05513 592 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 HTR4Q13639 388 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 EIPR1Q53HC9 387 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 RNASE12Q5GAN4 147 aaKnown RBP16.45■□□□□ 0.22
NUP54-205ENST00000507257 ZC3H14Q6PJT7 736 aaKnown RBP16.45■□□□□ 0.22
NUP54-205ENST00000507257 UNQ9370/PRO34162Q6UXP9 181 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 SLC43A2Q8N370 569 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 ZFPM2Q8WW38 1151 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 IRF7Q92985 503 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 AICDAQ9GZX7 198 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 SLC6A15Q9H2J7 730 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 MTHFD2LQ9H903 347 aaPredicted RBP16.45■□□□□ 0.22
NUP54-205ENST00000507257 NTMQ9P121 344 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 SLC7A7Q9UM01 511 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 RCE1Q9Y256 329 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 NTNG1Q9Y2I2 539 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 A0A1W2PQ45 241 aaPredicted RBP16.45■□□□□ 0.22
NUP54-205ENST00000507257 A0A1W2PQY0 241 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 TRAPPC13A5PLN9 417 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 K7ESM1 405 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 RFXAPO00287 272 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 CREBL2O60519 120 aaPredicted RBP16.45■□□□□ 0.22
NUP54-205ENST00000507257 RP2O75695 350 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 KRT33AO76009 404 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 HIST1H2ABP04908 130 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 THBS1P07996 1170 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 MPIP34949 423 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 ACVR1BP36896 505 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 OR12D2P58182 307 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 STXBP1P61764 594 aaKnown RBP16.45■□□□□ 0.22
NUP54-205ENST00000507257 HLXQ14774 488 aaPredicted RBP16.45■□□□□ 0.22
NUP54-205ENST00000507257 CDK5R1Q15078 307 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 C9orf64Q5T6V5 341 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 SLC48A1Q6P1K1 146 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 FRRS1Q6ZNA5 592 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 TMPRSS11FQ6ZWK6 438 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 HIST3H2AQ7L7L0 130 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 CCDC116Q8IYX3 515 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 CMTM4Q8IZR5 234 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 C15orf40Q8WUR7 153 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 THEM6Q8WUY1 208 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 SMPDL3BQ92485 455 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 HIST1H2ACQ93077 130 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 FBXW5Q969U6 566 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 PMEPA1Q969W9 287 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 GIMAP5Q96F15 307 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 SLC46A2Q9BY10 475 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 NRIP3Q9NQ35 241 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 NKIRAS2Q9NYR9 191 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 FLVCR2Q9UPI3 526 aa16.45■□□□□ 0.22
NUP54-205ENST00000507257 A0A1W2PR48 441 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 ANKRD20A5PA0PJZ0 165 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 ANTXRLA6NF34 631 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 LCMT2O60294 686 aaKnown RBP16.44■□□□□ 0.22
NUP54-205ENST00000507257 ERAL1O75616 437 aaKnown RBP16.44■□□□□ 0.22
NUP54-205ENST00000507257 AQP8O94778 261 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 F3P13726 295 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 PRG2P13727 222 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 GABRA1P14867 456 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 HIST1H1TP22492 207 aaPredicted RBP16.44■□□□□ 0.22
NUP54-205ENST00000507257 TSFMP43897 325 aaKnown RBP16.44■□□□□ 0.22
NUP54-205ENST00000507257 ZNF157P51786 506 aaPredicted RBP16.44■□□□□ 0.22
NUP54-205ENST00000507257 ZNF136P52737 540 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 ERVK-21P61565 698 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 SEC61A1P61619 476 aaKnown RBP16.44■□□□□ 0.22
NUP54-205ENST00000507257 DUSP2Q05923 314 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 PUS10Q3MIT2 529 aaKnown RBP16.44■□□□□ 0.22
NUP54-205ENST00000507257 SFRP4Q6FHJ7 346 aaPredicted RBP16.44■□□□□ 0.22
NUP54-205ENST00000507257 FAM199XQ6PEV8 388 aaPredicted RBP16.44■□□□□ 0.22
NUP54-205ENST00000507257 PRSS45Q7RTY3 260 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 TMCO2Q7Z6W1 182 aaPredicted RBP16.44■□□□□ 0.22
NUP54-205ENST00000507257 SLC39A11Q8N1S5 342 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 MEIOBQ8N635 442 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 OR5J2Q8NH18 312 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 LGALS14Q8TCE9 139 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 ASB13Q8WXK3 278 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 CXorf58Q96LI9 332 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 CACYBPQ9HB71 228 aaKnown RBP16.44■□□□□ 0.22
NUP54-205ENST00000507257 BEX1Q9HBH7 125 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 IFT46Q9NQC8 304 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 CEP350Q5VT06 3117 aa16.44■□□□□ 0.22
NUP54-205ENST00000507257 SUSD5O60279 629 aa16.43■□□□□ 0.22
NUP54-205ENST00000507257 IL9P15248 144 aa16.43■□□□□ 0.22
NUP54-205ENST00000507257 PRKACAP17612 351 aa16.43■□□□□ 0.22
NUP54-205ENST00000507257 PYCR1P32322 319 aa16.43■□□□□ 0.22
NUP54-205ENST00000507257 PSMA6P60900 246 aaKnown RBP16.43■□□□□ 0.22
NUP54-205ENST00000507257 ACTA2P62736 377 aa16.43■□□□□ 0.22
NUP54-205ENST00000507257 ACTG2P63267 376 aa16.43■□□□□ 0.22
NUP54-205ENST00000507257 ILF3Q12906 894 aaKnown RBP eCLIP16.43■□□□□ 0.225e-6■■□□□ 11.7
NUP54-205ENST00000507257 IL10RAQ13651 578 aa16.43■□□□□ 0.22
NUP54-205ENST00000507257 RANBP3LQ86VV4 465 aaPredicted RBP16.43■□□□□ 0.22
NUP54-205ENST00000507257 ZNF671Q8TAW3 534 aa16.43■□□□□ 0.22
NUP54-205ENST00000507257 LRFN5Q96NI6 719 aa16.43■□□□□ 0.22
NUP54-205ENST00000507257 DPH1Q9BZG8 443 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms