RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 TDGQ13569 410 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 SNAP47Q5SQN1 464 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 FAM27D1Q5T7N8 215 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 GARNL3Q5VVW2 1013 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TMEFF1Q8IYR6 380 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 OR52L1Q8NGH7 329 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 OR5M3Q8NGP4 307 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 WACQ9BTA9 647 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 KCNN2Q9H2S1 579 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 SRMSQ9H3Y6 488 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ADAP2Q9NPF8 381 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 CMC2Q9NRP2 79 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ZMIZ1Q9ULJ6 1067 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 MRPS2Q9Y399 296 aaKnown RBP14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 COL4A2P08572 1712 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 CACNA1IQ9P0X4 2223 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TBC1D3DA0A087WVF3 549 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TBC1D3IA0A087WXS9 549 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TBC1D3EA0A087X179 549 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 DAPL1A0PJW8 107 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TBC1D3LB9A6J9 549 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TNFSF14O43557 240 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 PLOD3O60568 738 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 STX11O75558 287 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TBC1D3HP0C7X1 549 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 GZMKP49863 264 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 E2F1Q01094 437 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 FAPQ12884 760 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 KLHL12Q53G59 568 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TBC1D3CQ6IPX1 549 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 IL20RBQ6UXL0 311 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TMPRSS11FQ6ZWK6 438 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TBC1D3Q8IZP1 549 aaPredicted RBP14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TMEM52Q8NDY8 209 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 OR13C2Q8NGS9 318 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ZFAND1Q8TCF1 268 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ARSGQ96EG1 525 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TEAD3Q99594 435 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 FOXQ1Q9C009 403 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 SIGLEC7Q9Y286 467 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 LOC105369274A0A096LPK9 316 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 A0A0G2JK05 382 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ZNF860A6NHJ4 632 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 B3GALT2O43825 422 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 RFPL3O75679 317 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 EIF4EP06730 217 aaKnown RBP14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ARSBP15848 533 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 BMP7P18075 431 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 NOS3P29474 1203 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ERP29P30040 261 aaKnown RBP14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 GALK2Q01415 458 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 Q6ZS52 159 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 OR4N4Q8N0Y3 316 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 DTX3Q8N9I9 347 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 OR10H4Q8NGA5 316 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 OR4M1Q8NGD0 313 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 C1QTNF7Q9BXJ2 289 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 MEPEQ9NQ76 525 aaPredicted RBP14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TRIM36Q9NQ86 728 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ENAMQ9NRM1 1142 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 C2orf42Q9NWW7 574 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 PILRAQ9UKJ1 303 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 CA5BQ9Y2D0 317 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TECTAO75443 2155 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 KNL1Q8NG31 2342 aa14.87□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 SHOXO15266 292 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 PLPP2O43688 288 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 LDB3O75112 727 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 PTP4A3O75365 173 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 PAHP00439 452 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 UGT2B7P16662 529 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 SLC2A5P22732 501 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TLX1P31314 330 aaPredicted RBP14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 MAP3K8P41279 467 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 OR10A3P58181 314 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 B2MP61769 119 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ZNF85Q03923 595 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 GPR176Q14439 515 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 PRRT3Q5FWE3 981 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ZNF57Q68EA5 555 aaPredicted RBP14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 FCRLBQ6BAA4 426 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ARL9Q6T311 187 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 PRSS41Q7RTY9 318 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 GLRX5Q86SX6 157 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 LRRC28Q86X40 367 aaPredicted RBP14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 SMAP2Q8WU79 429 aaPredicted RBP14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 BPIFA2Q96DR5 249 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 GALNT9Q9HCQ5 603 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 PRDM9Q9NQV7 894 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 LRRC72A6NJI9 287 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 PRR23D1E9PI22 279 aaPredicted RBP14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 FGF17O60258 216 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 FMO6PO60774 539 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 RCBTB2O95199 551 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 PDGFBP01127 241 aaPredicted RBP14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 C1QBP02746 253 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 MRPL3P09001 348 aaKnown RBP14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 PRR23D2P0DMB1 279 aaPredicted RBP14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 CLUP10909 449 aa14.86□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 GLULP15104 373 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms