RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 UBQLN3Q9H347 655 aa9.34□□□□□ -0.91
SKA1-204ENST00000488454 ZDHHC11Q9H8X9 412 aa9.34□□□□□ -0.91
SKA1-204ENST00000488454 TMEM27Q9HBJ8 222 aa9.34□□□□□ -0.91
SKA1-204ENST00000488454 SERINC1Q9NRX5 453 aa9.34□□□□□ -0.91
SKA1-204ENST00000488454 DCAF13Q9NV06 445 aaKnown RBP9.34□□□□□ -0.91
SKA1-204ENST00000488454 SELENONQ9NZV5 590 aa9.34□□□□□ -0.91
SKA1-204ENST00000488454 ACTR3BQ9P1U1 418 aa9.34□□□□□ -0.91
SKA1-204ENST00000488454 RPS6KB2Q9UBS0 482 aa9.34□□□□□ -0.91
SKA1-204ENST00000488454 NTNG1Q9Y2I2 539 aa9.34□□□□□ -0.91
SKA1-204ENST00000488454 SH3GLB1Q9Y371 365 aa9.34□□□□□ -0.91
SKA1-204ENST00000488454 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 LINC01387J3KSC0 135 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 ARPC2O15144 300 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 ZIC3O60481 467 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 BCAS1O75363 584 aaPredicted RBP9.33□□□□□ -0.92
SKA1-204ENST00000488454 CIB2O75838 187 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 PRB1P04280 392 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 CELA3AP09093 270 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 EDN3P14138 238 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 CD247P20963 164 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 MST1P26927 711 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 ADH6P28332 368 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 IFNA8P32881 189 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 RBPJQ06330 500 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 C19orf57Q0VDD7 668 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 EPS8Q12929 822 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 FXNQ16595 210 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 ZSCAN26Q16670 478 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 GLIPR1L2Q4G1C9 344 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 IFI44LQ53G44 452 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 PRR30Q53SZ7 412 aaPredicted RBP9.33□□□□□ -0.92
SKA1-204ENST00000488454 CMPK2Q5EBM0 449 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 MTX3Q5HYI7 312 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 ZNF324BQ6AW86 544 aaPredicted RBP9.33□□□□□ -0.92
SKA1-204ENST00000488454 WBP2NLQ6ICG8 309 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 ARHGAP11AQ6P4F7 1023 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 PGM2L1Q6PCE3 622 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 GFRALQ6UXV0 394 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 TRILQ7L0X0 811 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 YTHDF3Q7Z739 585 aaKnown RBP9.33□□□□□ -0.92
SKA1-204ENST00000488454 SIAH3Q8IW03 269 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 GPR32P1Q8NGA4 272 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 OR52E4Q8NGH9 312 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 VANGL1Q8TAA9 524 aaPredicted RBP9.33□□□□□ -0.92
SKA1-204ENST00000488454 NEIL3Q8TAT5 605 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 ST8SIA1Q92185 356 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 MRGPRX4Q96LA9 322 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 ARHGDIGQ99819 225 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 ZNF559Q9BR84 538 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 TRIM2Q9C040 744 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 ACER3Q9NUN7 267 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 GDF2Q9UK05 429 aaPredicted RBP9.33□□□□□ -0.92
SKA1-204ENST00000488454 CHST2Q9Y4C5 530 aa9.33□□□□□ -0.92
SKA1-204ENST00000488454 ITPR1Q14643 2758 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 A0A1B0GTH9 108 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 M0R3H8 397 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 FAAHO00519 579 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 AQP7O14520 342 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 FRS3O43559 492 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 PRKD3O94806 890 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 ACTL6AO96019 429 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 IGHG3P01860 377 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 ZNF17P17021 662 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 CHMP24386 653 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 APOBEC1P41238 236 aaKnown RBP9.32□□□□□ -0.92
SKA1-204ENST00000488454 ACAA2P42765 397 aaKnown RBP9.32□□□□□ -0.92
SKA1-204ENST00000488454 SLC1A3P43003 542 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 HTR3AP46098 478 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 CRYBA2P53672 197 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 SESN3P58005 492 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 HOXC5Q00444 222 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 MS4A2Q01362 244 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 MERTKQ12866 999 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 TOMM34Q15785 309 aaPredicted RBP9.32□□□□□ -0.92
SKA1-204ENST00000488454 PLPPR5Q32ZL2 321 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 ENPP6Q6UWR7 440 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 CYP2R1Q6VVX0 501 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 C1orf229Q6ZS94 237 aaPredicted RBP9.32□□□□□ -0.92
SKA1-204ENST00000488454 ASRGL1Q7L266 308 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 CARM1Q86X55 608 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 ZNF843Q8N446 348 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 OR5M1Q8NGP8 315 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 OR10Q1Q8NGQ4 319 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 GEMIN6Q8WXD5 167 aaKnown RBP9.32□□□□□ -0.92
SKA1-204ENST00000488454 ABTB1Q969K4 478 aaPredicted RBP9.32□□□□□ -0.92
SKA1-204ENST00000488454 SARAFQ96BY9 339 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 PYURFQ96I23 114 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 RAB3IPQ96QF0 476 aaPredicted RBP9.32□□□□□ -0.92
SKA1-204ENST00000488454 MCHR1Q99705 422 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 BARD1Q99728 777 aaKnown RBP9.32□□□□□ -0.92
SKA1-204ENST00000488454 UGT2B28Q9BY64 529 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 SLC6A15Q9H2J7 730 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 TESQ9UGI8 421 aaKnown RBP9.32□□□□□ -0.92
SKA1-204ENST00000488454 ACAD8Q9UKU7 415 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 SLC6A5Q9Y345 797 aa9.32□□□□□ -0.92
SKA1-204ENST00000488454 FAM32AQ9Y421 112 aaKnown RBP9.32□□□□□ -0.92
SKA1-204ENST00000488454 SPIN1Q9Y657 262 aaPredicted RBP9.32□□□□□ -0.92
SKA1-204ENST00000488454 A0A1B0GVC2 190 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 OR2M5A3KFT3 312 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 C7orf72A4D263 438 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms