RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TOMM20Q15388 145 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 MAPK11Q15759 364 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 HSPB2Q16082 182 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 PDZK1Q5T2W1 519 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 GCNT6Q5T4J0 391 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 OR5M10Q6IEU7 315 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 MTERF4Q7Z6M4 381 aaKnown RBP10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 C10orf111Q8N326 155 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 ZNF614Q8N883 585 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 GATSQ8NAP1 163 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 OR2M3Q8NG83 312 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 OR4K17Q8NGC6 315 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 LINC01560Q8TB33 94 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 DUSP19Q8WTR2 217 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 SLC38A5Q8WUX1 472 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 LRRC58Q96CX6 371 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 RCN3Q96D15 328 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 TMEM19Q96HH6 336 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 SLC39A3Q9BRY0 314 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 PRDM14Q9GZV8 571 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 GID8Q9NWU2 228 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 FBXL2Q9UKC9 423 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 DSPPQ9NZW4 1301 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 KIAA1549Q9HCM3 1950 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 ANK2Q01484 3957 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 CENPVL1A0A0U1RR11 272 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 A0A1W2PPR1 153 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 HAX1O00165 279 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 BMP5P22003 454 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 RPS4Y1P22090 263 aaKnown RBP10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 SRD5A2P31213 254 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 CEACAM8P31997 349 aaPredicted RBP10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 GCKP35557 465 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 TIMP3P35625 211 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 SELPLGQ14242 412 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 FGFBP1Q14512 234 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 GANABQ14697 944 aaKnown RBP10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 CD226Q15762 336 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 MAPK14Q16539 360 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 PRAMEF8Q5VWM4 474 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 PRAMEF7Q5VXH5 474 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 FAM91A1Q658Y4 838 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 NANOGP8Q6NSW7 305 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 LACC1Q8IV20 430 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 METTL25Q8N6Q8 603 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 CCDC197Q8NCU1 140 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 FAM83FQ8NEG4 500 aaPredicted RBP10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 OR8J3Q8NGG0 315 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 PHOSPHO1Q8TCT1 267 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 PMM1Q92871 262 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 ABTB1Q969K4 478 aaPredicted RBP10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 MAL2Q969L2 176 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 CMTM5Q96DZ9 223 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 SH3GL1Q99961 368 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 THUMPD3Q9BV44 507 aaKnown RBP10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 OR2B2Q9GZK3 357 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 DSN1Q9H410 356 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 TMEM38AQ9H6F2 299 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 KAT8Q9H7Z6 458 aaKnown RBP10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 PTGES2Q9H7Z7 377 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 MTHFD2LQ9H903 347 aaPredicted RBP10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 NANOGQ9H9S0 305 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 MED11Q9P086 117 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 ZNF629Q9UEG4 869 aaPredicted RBP10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 DKKL1Q9UK85 242 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 SLC6A5Q9Y345 797 aa10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 MRPS18CQ9Y3D5 142 aaKnown RBP10.73□□□□□ -0.69
SQSTM1-206ENST00000466342 SERINC4A6NH21 518 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 AGAP5A6NIR3 686 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 CD8B2A6NJW9 211 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 NDUFAB1O14561 156 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 AIM2O14862 343 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 CNOT4O95628 575 aaKnown RBP10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 IL2RAP01589 272 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 CPN1P15169 458 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 NUDT2P50583 147 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 DSCR4P56555 118 aaPredicted RBP10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 CDK6Q00534 326 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 ZNF117Q03924 483 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 POU4F3Q15319 338 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 CYP51A1Q16850 503 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 ACSF3Q4G176 576 aaPredicted RBP10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 EIPR1Q53HC9 387 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 RABL3Q5HYI8 236 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 WIPI1Q5MNZ9 446 aaPredicted RBP10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 NSUN5P2Q63ZY6 315 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 SEM1Q6ZVN7 128 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 NET1Q7Z628 596 aaPredicted RBP10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 SERPINA11Q86U17 422 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 YRDCQ86U90 279 aaKnown RBP10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 B4GALNT2Q8NHY0 566 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 NFKBIDQ8NI38 313 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 BBS10Q8TAM1 723 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 ZPLD1Q8TCW7 415 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 BCAS4Q8TDM0 211 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 ZG16BQ96DA0 208 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 C1GALT1C1Q96EU7 318 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 WDYHV1Q96HA8 205 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 UGT2B28Q9BY64 529 aa10.72□□□□□ -0.69
SQSTM1-206ENST00000466342 QRSL1Q9H0R6 528 aaKnown RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms