RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 MRPL19P49406 292 aaKnown RBP16.75■□□□□ 0.27
USP39-209ENST00000458268 ARFIP2P53365 341 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 KRTAP10-9P60411 292 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 EXOC3L2Q2M3D2 409 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 ZNF836Q6ZNA1 936 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 BTLAQ7Z6A9 289 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 KIF18BQ86Y91 864 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 SLC38A5Q8WUX1 472 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 ST8SIA1Q92185 356 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 ADGRG7Q96K78 797 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 SIKE1Q9BRV8 207 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 SRXN1Q9BYN0 137 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 PIGMQ9H3S5 423 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 C12orf49Q9H741 205 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 RNF122Q9H9V4 155 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 TIGARQ9NQ88 270 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 SERINC1Q9NRX5 453 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 PAQR5Q9NXK6 330 aaPredicted RBP16.75■□□□□ 0.27
USP39-209ENST00000458268 SLC25A37Q9NYZ2 338 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 CRIM1Q9NZV1 1036 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 PROCRQ9UNN8 238 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 EMC9Q9Y3B6 208 aa16.75■□□□□ 0.27
USP39-209ENST00000458268 GKN3PP0CG01 181 aa16.74■□□□□ 0.27
USP39-209ENST00000458268 ADH6P28332 368 aa16.74■□□□□ 0.27
USP39-209ENST00000458268 MAPK11Q15759 364 aa16.74■□□□□ 0.27
USP39-209ENST00000458268 GCNT6Q5T4J0 391 aa16.74■□□□□ 0.27
USP39-209ENST00000458268 C3orf33Q6P1S2 294 aa16.74■□□□□ 0.27
USP39-209ENST00000458268 PLEKHM3Q6ZWE6 761 aa16.74■□□□□ 0.27
USP39-209ENST00000458268 DHDDSQ86SQ9 333 aa16.74■□□□□ 0.27
USP39-209ENST00000458268 MSRB3Q8IXL7 192 aa16.74■□□□□ 0.27
USP39-209ENST00000458268 NFKBIDQ8NI38 313 aa16.74■□□□□ 0.27
USP39-209ENST00000458268 STARD4Q96DR4 205 aa16.74■□□□□ 0.27
USP39-209ENST00000458268 LURAP1Q96LR2 239 aa16.74■□□□□ 0.27
USP39-209ENST00000458268 MED4Q9NPJ6 270 aa16.74■□□□□ 0.27
USP39-209ENST00000458268 CTPS2Q9NRF8 586 aa16.74■□□□□ 0.27
USP39-209ENST00000458268 RLIMQ9NVW2 624 aa16.74■□□□□ 0.27
USP39-209ENST00000458268 DNAJB12Q9NXW2 375 aaKnown RBP16.74■□□□□ 0.27
USP39-209ENST00000458268 VAPAQ9P0L0 249 aa16.74■□□□□ 0.27
USP39-209ENST00000458268 LEF1Q9UJU2 399 aaPredicted RBP16.74■□□□□ 0.27
USP39-209ENST00000458268 FOXD3Q9UJU5 478 aaPredicted RBP16.74■□□□□ 0.27
USP39-209ENST00000458268 ZNF443Q9Y2A4 671 aaPredicted RBP16.74■□□□□ 0.27
USP39-209ENST00000458268 NDUFAF1Q9Y375 327 aa16.74■□□□□ 0.27
USP39-209ENST00000458268 MPDZO75970 2070 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 A0A1W2PP18 115 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 TUBAL3A6NHL2 446 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 EVPLLA8MZ36 301 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 ADAMDEC1O15204 470 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 CRHP06850 196 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 GUSBP08236 651 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 TFPTP0C1Z6 253 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 KIR2DL2P43627 348 aaPredicted RBP16.73■□□□□ 0.27
USP39-209ENST00000458268 PLAURQ03405 335 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 ZNF239Q16600 458 aaKnown RBP16.73■□□□□ 0.27
USP39-209ENST00000458268 LIN52Q52LA3 116 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 CADM2Q8N3J6 435 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 ACBD4Q8NC06 268 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 FAM71CQ8NEG0 241 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 C14orf79Q96F83 325 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 TREX2Q9BQ50 279 aaPredicted RBP16.73■□□□□ 0.27
USP39-209ENST00000458268 COQ10BQ9H8M1 238 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 SLC24A3Q9HC58 644 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 ACER3Q9NUN7 267 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 KCNN3Q9UGI6 736 aa16.73■□□□□ 0.27
USP39-209ENST00000458268 ADAM11O75078 769 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 NID1P14543 1247 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 UQCRBP14927 111 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 MAGEA8P43361 318 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 EEF1A1P68104 462 aaKnown RBP16.72■□□□□ 0.27
USP39-209ENST00000458268 IRX1P78414 480 aaPredicted RBP16.72■□□□□ 0.27
USP39-209ENST00000458268 FADDQ13158 208 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 NFYCQ13952 458 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 LARS2Q15031 903 aaKnown RBP16.72■□□□□ 0.27
USP39-209ENST00000458268 FBXL19-AS1Q494R0 122 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 SLC25A53Q5H9E4 307 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 ZNF311Q5JNZ3 666 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 LRIF1Q5T3J3 769 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 EEF1A1P5Q5VTE0 462 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 CGB2Q6NT52 195 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 FCRLAQ7L513 359 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 FAM214BQ7L5A3 538 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 ZNF610Q8N9Z0 462 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 ABHD3Q8WU67 409 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 OIT3Q8WWZ8 545 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 CPNE4Q96A23 557 aaPredicted RBP16.72■□□□□ 0.27
USP39-209ENST00000458268 GPATCH1Q9BRR8 931 aaKnown RBP16.72■□□□□ 0.27
USP39-209ENST00000458268 MCCC2Q9HCC0 563 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 SLC52A3Q9NQ40 469 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 THUMPD1Q9NXG2 353 aaKnown RBP16.72■□□□□ 0.27
USP39-209ENST00000458268 JKAMPQ9P055 326 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 ITGB1BP2Q9UKP3 347 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 ZNF232Q9UNY5 417 aa16.72■□□□□ 0.27
USP39-209ENST00000458268 SPIN1Q9Y657 262 aaPredicted RBP16.72■□□□□ 0.27
USP39-209ENST00000458268 A0A0G2JPF8 293 aa16.71■□□□□ 0.27
USP39-209ENST00000458268 CFAP73A6NFT4 308 aa16.71■□□□□ 0.27
USP39-209ENST00000458268 A8MXE2 369 aa16.71■□□□□ 0.27
USP39-209ENST00000458268 HNRNPCL2B2RXH8 293 aa16.71■□□□□ 0.27
USP39-209ENST00000458268 HNRNPCL3B7ZW38 293 aa16.71■□□□□ 0.27
USP39-209ENST00000458268 MSTNO14793 375 aa16.71■□□□□ 0.27
USP39-209ENST00000458268 FRS3O43559 492 aa16.71■□□□□ 0.27
USP39-209ENST00000458268 HNRNPCL1O60812 293 aaKnown RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms