RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 SFTPDP35247 375 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 IDH2P48735 452 aaKnown RBP13.23□□□□□ -0.29
CHD1-202ENST00000414220 MAP2K6P52564 334 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 ZNF136P52737 540 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 MERTKQ12866 999 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 SCARB2Q14108 478 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 TOMM34Q15785 309 aaPredicted RBP13.23□□□□□ -0.29
CHD1-202ENST00000414220 CYP51A1Q16850 503 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 TRMT5Q32P41 509 aaKnown RBP13.23□□□□□ -0.29
CHD1-202ENST00000414220 TMEM176BQ3YBM2 270 aaPredicted RBP13.23□□□□□ -0.29
CHD1-202ENST00000414220 MRPL2Q5T653 305 aaKnown RBP13.23□□□□□ -0.29
CHD1-202ENST00000414220 SPATA21Q7Z572 469 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 HMGN2P46Q86SG4 172 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 GGNQ86UU5 652 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 SLC30A8Q8IWU4 369 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 C11orf65Q8NCR3 313 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 OR10D3Q8NH80 312 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 POC1BQ8TC44 478 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 OSTF1Q92882 214 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 CPNE4Q96A23 557 aaPredicted RBP13.23□□□□□ -0.29
CHD1-202ENST00000414220 SPATA9Q9BWV2 254 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 FANCFQ9NPI8 374 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 KLHL28Q9NXS3 571 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 ANGPT4Q9Y264 503 aa13.23□□□□□ -0.29
CHD1-202ENST00000414220 ZNF443Q9Y2A4 671 aaPredicted RBP13.23□□□□□ -0.29
CHD1-202ENST00000414220 PHF3Q92576 2039 aaKnown RBP13.23□□□□□ -0.29
CHD1-202ENST00000414220 NCOA6Q14686 2063 aaPredicted RBP13.22□□□□□ -0.29
CHD1-202ENST00000414220 SPTBN1Q01082 2364 aaKnown RBP13.22□□□□□ -0.29
CHD1-202ENST00000414220 DSPPQ9NZW4 1301 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 USP9YO00507 2555 aaPredicted RBP13.22□□□□□ -0.29
CHD1-202ENST00000414220 TRBV5-3A0A0A0MS03 114 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 LOC100653049A0A140TA62 436 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 GMNCA6NCL1 334 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 EEF1E1-BLOC1S5C9J1V9 151 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 ETV2O00321 342 aaPredicted RBP13.22□□□□□ -0.29
CHD1-202ENST00000414220 FAAHO00519 579 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 EEF1E1O43324 174 aaKnown RBP13.22□□□□□ -0.29
CHD1-202ENST00000414220 CXCL13O43927 109 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 KRT34O76011 436 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 TGM6O95932 706 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 OPN1LWP04000 364 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 NUDT7P0C024 238 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 GRNP28799 593 aaKnown RBP13.22□□□□□ -0.29
CHD1-202ENST00000414220 UQCRC1P31930 480 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 CPA2P48052 419 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 CLK1P49759 484 aaKnown RBP13.22□□□□□ -0.29
CHD1-202ENST00000414220 CTBP2P56545 445 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 CDSNQ15517 529 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 INTS11Q5TA45 600 aaKnown RBP13.22□□□□□ -0.29
CHD1-202ENST00000414220 RNF220Q5VTB9 566 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 MEX3BQ6ZN04 569 aaKnown RBP13.22□□□□□ -0.29
CHD1-202ENST00000414220 ZNF836Q6ZNA1 936 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 PLEKHM3Q6ZWE6 761 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 KIF18BQ86Y91 864 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 LIX1LQ8IVB5 337 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 MSRB3Q8IXL7 192 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 CNEP1R1Q8N9A8 125 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 NAXEQ8NCW5 288 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 HIPK4Q8NE63 616 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 NFKBIDQ8NI38 313 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 RP9Q8TA86 221 aaKnown RBP13.22□□□□□ -0.29
CHD1-202ENST00000414220 FNDC9Q8TBE3 224 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 C10orf82Q8WW14 230 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 FIG4Q92562 907 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 CNOT9Q92600 299 aaKnown RBP13.22□□□□□ -0.29
CHD1-202ENST00000414220 MAL2Q969L2 176 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 SLC35B4Q969S0 331 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 MARVELD3Q96A59 401 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 ZHX1-C8orf76Q96EF9 292 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 ELAC2Q9BQ52 826 aaKnown RBP13.22□□□□□ -0.29
CHD1-202ENST00000414220 CPPED1Q9BRF8 314 aaPredicted RBP13.22□□□□□ -0.29
CHD1-202ENST00000414220 FAM107BQ9H098 131 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 EVA1AQ9H8M9 152 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 DNAJB12Q9NXW2 375 aaKnown RBP13.22□□□□□ -0.29
CHD1-202ENST00000414220 EMC9Q9Y3B6 208 aa13.22□□□□□ -0.29
CHD1-202ENST00000414220 A0A0J9YW62 118 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 CDHR4A6H8M9 788 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 CLDN24A6NM45 220 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 KDM4EB2RXH2 506 aaPredicted RBP13.21□□□□□ -0.29
CHD1-202ENST00000414220 H0YC42 278 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 SYT5O00445 386 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 MRASO14807 208 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 NTN1O95631 604 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 TFPIP10646 304 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 LSP1P33241 339 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 SLC1A3P43003 542 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 TPD52P55327 224 aaPredicted RBP13.21□□□□□ -0.29
CHD1-202ENST00000414220 GNGT1P63211 74 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 CSNK2A1P68400 391 aaPredicted RBP13.21□□□□□ -0.29
CHD1-202ENST00000414220 EPS8Q12929 822 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 MAPK11Q15759 364 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 RPS26P11Q5JNZ5 115 aaPredicted RBP13.21□□□□□ -0.29
CHD1-202ENST00000414220 ZNF787Q6DD87 383 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 HIST2H2BCQ6DN03 193 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 POMZP3Q6PJE2 187 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 RETREG3Q86VR2 466 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 SNX32Q86XE0 403 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 VRK2Q86Y07 508 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 GCNT2Q8N0V5 402 aa13.21□□□□□ -0.29
CHD1-202ENST00000414220 SLC26A7Q8TE54 656 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms