RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 SLC27A6Q9Y2P4 619 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 RNF215Q9Y6U7 377 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 OR5K3A6NET4 321 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 EPXP11678 715 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 PEPDP12955 493 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 SOX9P48436 509 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 NRG3P56975 720 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 PUDPQ08623 228 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 OR1Q1Q15612 314 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 CLLU1Q5K131 121 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 MRPL2Q5T653 305 aaKnown RBP15.17■□□□□ 0.02
SDC4-201ENST00000372733 RTL4Q6ZR62 310 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 FGD2Q7Z6J4 655 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 ARL14Q8N4G2 192 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 LGALS14Q8TCE9 139 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 PIGKQ92643 395 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 CCDC86Q9H6F5 360 aaKnown RBP15.17■□□□□ 0.02
SDC4-201ENST00000372733 METTL17Q9H7H0 456 aaPredicted RBP15.17■□□□□ 0.02
SDC4-201ENST00000372733 CREBZFQ9NS37 354 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 SCP2D1Q9UJQ7 156 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 TRPM6Q9BX84 2022 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 DOCK9Q9BZ29 2069 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.16■□□□□ 0.02
SDC4-201ENST00000372733 ABHD14A-ACY1A0A1B0GW23 586 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 RIIAD1A6NNX1 92 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 LYPD3O95274 346 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 PPP1R3DO95685 299 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 ADH1CP00326 375 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 HRGP04196 525 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 VIPR2P41587 438 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 RPL6Q02878 288 aaKnown RBP15.16■□□□□ 0.02
SDC4-201ENST00000372733 SNTB2Q13425 540 aaKnown RBP15.16■□□□□ 0.02
SDC4-201ENST00000372733 PXDC1Q5TGL8 231 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 ETFBKMTQ8IXQ9 262 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 C10orf90Q96M02 699 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 FBXO34Q9NWN3 711 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 ACSL5Q9ULC5 683 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 AK6Q9Y3D8 172 aaKnown RBP15.16■□□□□ 0.02
SDC4-201ENST00000372733 NPFFR2Q9Y5X5 522 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 STON1Q9Y6Q2 735 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 DUXAA6NLW8 204 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 PEX12O00623 359 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 PCDH8O95206 1070 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 FGF19O95750 216 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 CLTBP09497 229 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 POLR2CP19387 275 aaPredicted RBP15.16■□□□□ 0.02
SDC4-201ENST00000372733 SLC2A5P22732 501 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 NDUFS1P28331 727 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 GDNFP39905 211 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 SUZ12Q15022 739 aaKnown RBP15.16■□□□□ 0.02
SDC4-201ENST00000372733 TMEM255AQ5JRV8 349 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 GARNL3Q5VVW2 1013 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 SFRP4Q6FHJ7 346 aaPredicted RBP15.16■□□□□ 0.02
SDC4-201ENST00000372733 NLRC3Q7RTR2 1065 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 ASPGQ86U10 573 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 LRRC25Q8N386 305 aaPredicted RBP15.16■□□□□ 0.02
SDC4-201ENST00000372733 FTMTQ8N4E7 242 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 LSMEM1Q8N8F7 131 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 BPIFA2Q96DR5 249 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 HHIPL1Q96JK4 782 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 SDF2Q99470 211 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 DDOQ99489 341 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 SIGLEC7Q9Y286 467 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 INSL6Q9Y581 213 aa15.16■□□□□ 0.02
SDC4-201ENST00000372733 A8MUA0 341 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 FLRT2O43155 660 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 GMDSO60547 372 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 LINC00271P0C7V0 271 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 PITPNAQ00169 270 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 ID2Q02363 134 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 MFSD13AQ14CX5 517 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 GRK1Q15835 563 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 EIPR1Q53HC9 387 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 SLC39A5Q6ZMH5 540 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 Q6ZTK2 550 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 OR56B4Q8NH76 319 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 ORAI1Q96D31 301 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 C1QTNF7Q9BXJ2 289 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 RBCK1Q9BYM8 510 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 CHIAQ9BZP6 476 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 ZNF436Q9C0F3 470 aaPredicted RBP15.15■□□□□ 0.02
SDC4-201ENST00000372733 WDR26Q9H7D7 661 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 OR6C2Q9NZP2 312 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 USP36Q9P275 1121 aaKnown RBP15.15■□□□□ 0.02
SDC4-201ENST00000372733 TBX21Q9UL17 535 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 PPIEQ9UNP9 301 aaKnown RBP15.15■□□□□ 0.02
SDC4-201ENST00000372733 SLC35A3Q9Y2D2 325 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 RCBTB2O95199 551 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 ACRP10323 421 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 GDI2P50395 445 aaKnown RBP15.15■□□□□ 0.02
SDC4-201ENST00000372733 ARHGAP11BQ3KRB8 267 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 TJAP1Q5JTD0 557 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 MTSS1LQ765P7 747 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 CHMP1BQ7LBR1 199 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 ZNF671Q8TAW3 534 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 GRHL3Q8TE85 626 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 SMIM4Q8WVI0 70 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 DERL3Q96Q80 235 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 KCMF1Q9P0J7 381 aa15.15■□□□□ 0.02
SDC4-201ENST00000372733 KCNE5Q9UJ90 142 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms