RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 FAM155AB1AL88 458 aaPredicted RBP18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 DVL2O14641 736 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 TRAPPC6AO75865 159 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 RPS21P63220 83 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 TMEM25Q86YD3 366 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 TM9SF4Q92544 642 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 GHSRQ92847 366 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 RRNAD1Q96FB5 475 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 MACROD1Q9BQ69 325 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 LTB4R2Q9NPC1 389 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 ABI3Q9P2A4 366 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 SERTAD3Q9UJW9 196 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 TMX2-CTNND1H3BSU7 103 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 ADAM23O75077 832 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 SNU13P55769 128 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 ZNF704Q6ZNC4 412 aaPredicted RBP18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 ST7LQ8TDW4 575 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 ZNF223Q9UK11 482 aaPredicted RBP18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 CPED1A4D0V7 1026 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 ZNF195O14628 629 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 GPRIN2O60269 458 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 CNMDO75829 334 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 CTSCP53634 463 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 PSPHP78330 225 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 NFATC4Q14934 902 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 ZNF619Q8N2I2 560 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 SUMF2Q8NBJ7 301 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 FRZBQ92765 325 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 DUSP21Q9H596 190 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 TMEM82A0PJX8 343 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 GGT3PA6NGU5 568 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 E9PI62 339 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 ADH1BP00325 375 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 SLC6A19Q695T7 634 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 ZC3H14Q6PJT7 736 aaKnown RBP18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 LGALS14Q8TCE9 139 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 FAM83CQ9BQN1 747 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 SLC38A1Q9H2H9 487 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 TCEAL2Q9H3H9 227 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 MED20Q9H944 212 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 ZNF175Q9Y473 711 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 A0A1W2PQU0 124 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 P2RX6O15547 441 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 MED6O75586 246 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 SYN1P17600 705 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 DLEU7Q6UYE1 221 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 CDS1Q92903 461 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 FBRSQ9HAH7 460 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 ACKR4Q9NPB9 350 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 TMPRSS11EQ9UL52 423 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 SLC35A3Q9Y2D2 325 aa18.29■□□□□ 0.52
CCDC88B-202ENST00000356786 A0A1W2PS29 197 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 GRM7Q14831 915 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 LCTLQ6UWM7 567 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 NPRL2Q8WTW4 380 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 NUDT8Q8WV74 236 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 GABRQQ9UN88 632 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 LRP5O75197 1615 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 TGFBR1P36897 503 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 MTNR1BP49286 362 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 ZNF84P51523 738 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 CCINQ13939 588 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 CCNJQ5T5M9 372 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 VASNQ6EMK4 673 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 FIP1L1Q6UN15 594 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 PAQR9Q6ZVX9 377 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 PEX11GQ96HA9 241 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 WDR92Q96MX6 357 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 GPR78Q96P69 363 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 SLC2A11Q9BYW1 496 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 CWH43Q9H720 699 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 SIX6O95475 246 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 HOXB5P09067 269 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 GPX2P18283 190 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 EIF2B1Q14232 305 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 RSU1Q15404 277 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 OR51T1Q8NGJ9 327 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 DAZLQ92904 295 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 FAM71F1Q96KD3 344 aaPredicted RBP18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 INTS14Q96SY0 518 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 NEURL2Q9BR09 285 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 PELOQ9BRX2 385 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 CSNK1G1Q9HCP0 422 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 RHBDD3Q9Y3P4 386 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 NPIPA2E9PIF3 369 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 NPIPA3F8WFD2 350 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 WDPCPO95876 746 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 GAB1Q13480 694 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 UBE2NLQ5JXB2 153 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 RPL22L1Q6P5R6 122 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 FIGLAQ6QHK4 219 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 FANCFQ9NPI8 374 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 USP3Q9Y6I4 520 aa18.28■□□□□ 0.52
CCDC88B-202ENST00000356786 FAM230AA0A1W2PPH8 454 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 C9J4A7 227 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 RAB4BP61018 213 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 CNKSR3Q6P9H4 555 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 P4HA3Q7Z4N8 544 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 OR4M1Q8NGD0 313 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms