RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 OR51V1Q9H2C8 321 aa20.42■□□□□ 0.86
UPF3A-201ENST00000351487 SPTY2D1-AS1A0A0U1RR47 76 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 PPP1R3DO95685 299 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 IGKV1D-16P01601 117 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 HK1P19367 917 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 SLC6A6P31641 620 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 HHEXQ03014 270 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 TBRG1Q3YBR2 411 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 ARHGAP11AQ6P4F7 1023 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 LINC00114Q6XXX2 140 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 TAF8Q7Z7C8 310 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 OAFQ86UD1 273 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 ZNF614Q8N883 585 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 SLC7A6Q92536 515 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 PTCHD1Q96NR3 888 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 KCNJ15Q99712 375 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 MCCC2Q9HCC0 563 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 RBFOX1Q9NWB1 397 aaKnown RBP20.41■□□□□ 0.86
UPF3A-201ENST00000351487 MALT1Q9UDY8 824 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 A0A0B4J293 547 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 NGFRP08138 427 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 RFX3P48380 749 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 CCR5P51681 352 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 ACTC1P68032 377 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 ACTA1P68133 377 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 MADCAM1Q13477 382 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 QPRTQ15274 297 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 SF3B4Q15427 424 aaKnown RBP eCLIP20.41■□□□□ 0.862e-10■■■■■ 27.3
UPF3A-201ENST00000351487 ZSWIM7Q19AV6 140 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 DEFB110Q30KQ9 67 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 ALG10BQ5I7T1 473 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 NLGN4YQ8NFZ3 816 aaPredicted RBP20.41■□□□□ 0.86
UPF3A-201ENST00000351487 HMGB4Q8WW32 186 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 CAPSLQ8WWF8 208 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 TP53INP1Q96A56 240 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 KCTD12Q96CX2 325 aaKnown RBP20.41■□□□□ 0.86
UPF3A-201ENST00000351487 RNF31Q96EP0 1072 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 VSTM2LQ96N03 204 aa20.41■□□□□ 0.86
UPF3A-201ENST00000351487 TP63Q9H3D4 680 aaPredicted RBP20.41■□□□□ 0.86
UPF3A-201ENST00000351487 TMEM131Q92545 1883 aa20.4■□□□□ 0.86
UPF3A-201ENST00000351487 XIRP2A4UGR9 3374 aa20.4■□□□□ 0.86
UPF3A-201ENST00000351487 IDH3BO43837 385 aa20.4■□□□□ 0.86
UPF3A-201ENST00000351487 CHRNB1P11230 501 aa20.4■□□□□ 0.86
UPF3A-201ENST00000351487 ZNF85Q03923 595 aa20.4■□□□□ 0.86
UPF3A-201ENST00000351487 POU4F2Q12837 409 aa20.4■□□□□ 0.86
UPF3A-201ENST00000351487 FZD2Q14332 565 aa20.4■□□□□ 0.86
UPF3A-201ENST00000351487 ZNF141Q15928 474 aa20.4■□□□□ 0.86
UPF3A-201ENST00000351487 PRTGQ2VWP7 1150 aa20.4■□□□□ 0.86
UPF3A-201ENST00000351487 ZFP69Q49AA0 526 aa20.4■□□□□ 0.86
UPF3A-201ENST00000351487 ZNF542PQ5EBM4 170 aa20.4■□□□□ 0.86
UPF3A-201ENST00000351487 ZC3H14Q6PJT7 736 aaKnown RBP20.4■□□□□ 0.86
UPF3A-201ENST00000351487 TRILQ7L0X0 811 aa20.4■□□□□ 0.86
UPF3A-201ENST00000351487 GATAD2AQ86YP4 633 aa20.4■□□□□ 0.86
UPF3A-201ENST00000351487 Q8N9G6 341 aaPredicted RBP20.4■□□□□ 0.86
UPF3A-201ENST00000351487 C19orf47Q8N9M1 422 aaKnown RBP20.4■□□□□ 0.86
UPF3A-201ENST00000351487 DUSP18Q8NEJ0 188 aa20.4■□□□□ 0.86
UPF3A-201ENST00000351487 LRFN5Q96NI6 719 aa20.4■□□□□ 0.86
UPF3A-201ENST00000351487 CD207Q9UJ71 328 aa20.4■□□□□ 0.86
UPF3A-201ENST00000351487 E9PI62 339 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 NPIPB9F8W1W9 429 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 SC5DO75845 299 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 IGLV3-19P01714 112 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 CSF2P04141 144 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 CTSBP07858 339 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 FAM157BP0CG42 384 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 CLUP10909 449 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 MLLT3P42568 568 aaPredicted RBP20.39■□□□□ 0.86
UPF3A-201ENST00000351487 SLC16A1P53985 500 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 FGFBP1Q14512 234 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 KIAA0895LQ68EN5 471 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 FCRLBQ6BAA4 426 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 ARMC6Q6NXE6 501 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 MZT2BQ6NZ67 158 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 ARL9Q6T311 187 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 VASH1Q7L8A9 365 aaPredicted RBP20.39■□□□□ 0.86
UPF3A-201ENST00000351487 OR4N2Q8NGD1 307 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 TNFRSF13CQ96RJ3 184 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 CAPN10Q9HC96 672 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 ST6GALNAC1Q9NSC7 600 aaPredicted RBP20.39■□□□□ 0.86
UPF3A-201ENST00000351487 SERTAD3Q9UJW9 196 aa20.39■□□□□ 0.86
UPF3A-201ENST00000351487 IFNGP01579 166 aa20.39■□□□□ 0.85
UPF3A-201ENST00000351487 MRPL3P09001 348 aaKnown RBP20.39■□□□□ 0.85
UPF3A-201ENST00000351487 PRKAR1AP10644 381 aa20.39■□□□□ 0.85
UPF3A-201ENST00000351487 TYRP1P17643 537 aa20.39■□□□□ 0.85
UPF3A-201ENST00000351487 IGLV3-21P80748 117 aaPredicted RBP20.39■□□□□ 0.85
UPF3A-201ENST00000351487 DBPQ10586 325 aaPredicted RBP20.39■□□□□ 0.85
UPF3A-201ENST00000351487 SMPDL3BQ92485 455 aa20.39■□□□□ 0.85
UPF3A-201ENST00000351487 RIT1Q92963 219 aa20.39■□□□□ 0.85
UPF3A-201ENST00000351487 C4orf36Q96KX1 117 aa20.39■□□□□ 0.85
UPF3A-201ENST00000351487 PPIL3Q9H2H8 161 aaKnown RBP20.39■□□□□ 0.85
UPF3A-201ENST00000351487 ERVMER34-1Q9H9K5 563 aa20.39■□□□□ 0.85
UPF3A-201ENST00000351487 TMEM165Q9HC07 324 aa20.39■□□□□ 0.85
UPF3A-201ENST00000351487 TGFBR3LH3BV60 316 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 RNH1P13489 461 aaKnown RBP20.38■□□□□ 0.85
UPF3A-201ENST00000351487 ELK1P19419 428 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 CCINQ13939 588 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 PLET1Q6UQ28 207 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 ZNF550Q7Z398 422 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 PXKQ7Z7A4 578 aa20.38■□□□□ 0.85
UPF3A-201ENST00000351487 TPRA1Q86W33 373 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms