RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 CEP19Q96LK0 163 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 DGAT2Q96PD7 388 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 NXF2Q9GZY0 626 aaKnown RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 ANKRD19PQ9H560 264 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 CHURC1-FNTBB4DL54 471 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 AQP9O43315 295 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 UPK1BO75841 260 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 IL9P15248 144 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 TBXA2RP21731 343 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 TNFSF8P32971 234 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 FNTBP49356 437 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 FABP5Q01469 135 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 ZNHIT3Q15649 155 aaPredicted RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 ALG10BQ5I7T1 473 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 C3orf38Q5JPI3 329 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 MRGPREQ86SM8 312 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 KLBQ86Z14 1044 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 CAMKK1Q8N5S9 505 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 OR51L1Q8NGJ5 315 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 TP53INP1Q96A56 240 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 TCTN2Q96GX1 697 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 HS6ST2Q96MM7 605 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 VSTM2LQ96N03 204 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 TNFRSF13CQ96RJ3 184 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 SMAD5Q99717 465 aaKnown RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 TMEM27Q9HBJ8 222 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 CCDC59Q9P031 241 aaKnown RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 SEC14L4Q9UDX3 406 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 FBXL21Q9UKT6 434 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 CDC14CA4D256 554 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 SNTNA6NMZ2 147 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 SSX4O60224 188 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 CTNSO60931 367 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 NCR1O76036 304 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 CT45A8P0DMV1 189 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 CT45A9P0DMV2 189 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 SPNP16150 400 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 BCKDHBP21953 392 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 ACAA2P42765 397 aaKnown RBP9.8□□□□□ -0.84
CUX1-221ENST00000622516 FASLGP48023 281 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 CRYZQ08257 329 aaKnown RBP9.8□□□□□ -0.84
CUX1-221ENST00000622516 HNRNPA0Q13151 305 aaKnown RBP9.8□□□□□ -0.84
CUX1-221ENST00000622516 CAMK2BQ13554 666 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 CT45A2Q5DJT8 189 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 SPANXN2Q5MJ10 180 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 GKN2Q86XP6 184 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 SIX5Q8N196 739 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 SPRYD4Q8WW59 207 aaPredicted RBP9.8□□□□□ -0.84
CUX1-221ENST00000622516 NEURL2Q9BR09 285 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 OR10A5Q9H207 317 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 SLC2A4RGQ9NR83 387 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 PNO1Q9NRX1 252 aaKnown RBP9.8□□□□□ -0.84
CUX1-221ENST00000622516 DNAJB12Q9NXW2 375 aaKnown RBP9.8□□□□□ -0.84
CUX1-221ENST00000622516 MED31Q9Y3C7 131 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 CNTRLQ7Z7A1 2325 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 C2orf92A0A1B0GVN3 265 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 C17orf51A8MQB3 221 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 LOC110117498-PIK3R3F6TDL0 507 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 SRPX2O60687 465 aaPredicted RBP9.8□□□□□ -0.84
CUX1-221ENST00000622516 PPP1R3DO95685 299 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 CPEP16870 476 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 CD1CP29017 333 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 BMP8BP34820 402 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 PI4KAP42356 2102 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 HCCSP53701 268 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 NIPAL1Q6NVV3 410 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 LINC00299Q6ZSB3 139 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 BMP8AQ7Z5Y6 402 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 CADM3Q8N126 398 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 NR4A3Q92570 626 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 PTP4A1Q93096 173 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 TEX12Q9BXU0 123 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 SACM1LQ9NTJ5 587 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 PCDHGB6Q9Y5F9 930 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 PEX16Q9Y5Y5 336 aa9.8□□□□□ -0.84
CUX1-221ENST00000622516 CD8B2A6NJW9 211 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 RHPN2P1A8MT19 583 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 ZNF670-ZNF695F2Z2N8 137 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 CLDN4O14493 209 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 BHLHE40O14503 412 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 IMPA2O14732 288 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 MAGEB4O15481 346 aaPredicted RBP9.79□□□□□ -0.84
CUX1-221ENST00000622516 SERPINI2O75830 405 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 DLGAP3O95886 979 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 CD8BP10966 210 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 DRD5P21918 477 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 FOXK2Q01167 660 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 ZCCHC12Q6PEW1 402 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 KIRREL2Q6UWL6 708 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 OAFQ86UD1 273 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 TMEM151BQ8IW70 566 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 PRR22Q8IZ63 422 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 OR52L1Q8NGH7 329 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 TSLPQ969D9 159 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 RFKQ969G6 155 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 PRRG3Q9BZD7 231 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 NRSN2Q9GZP1 204 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 SMURF1Q9HCE7 757 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 PDE7BQ9NP56 450 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 FGF20Q9NP95 211 aaPredicted RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms