RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 MFAP5Q13361 173 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 COL28A1Q2UY09 1125 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 NDUFAF6Q330K2 333 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 RFX4Q33E94 735 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 ALG10BQ5I7T1 473 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 PODNL1Q6PEZ8 512 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 ZNF730Q6ZMV8 503 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 LINC00696Q6ZRV3 163 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 CDK20Q8IZL9 346 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 OR10G2Q8NGC3 310 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 ACOT11Q8WXI4 607 aaPredicted RBP13.92□□□□□ -0.18
TRIM28-209ENST00000597423 DNAJC9Q8WXX5 260 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 RDH12Q96NR8 316 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 TACO1Q9BSH4 297 aaKnown RBP13.92□□□□□ -0.18
TRIM28-209ENST00000597423 RNF32Q9H0A6 362 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 GABARAPL1Q9H0R8 117 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 C12orf10Q9HB07 376 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 CTPS2Q9NRF8 586 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 ENOPH1Q9UHY7 261 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 SLC7A7Q9UM01 511 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 MGAT4BQ9UQ53 548 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 SSUH2Q9Y2M2 353 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 PIEZO1Q92508 2521 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 A0A0B4J2E0 115 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 A0A1B0GX12 115 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 SH3PXD2BA1X283 911 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 CHP2O43745 196 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 OR10H3O60404 316 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 SEMA7AO75326 666 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 CD46P15529 392 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 ZNF26P17031 533 aaPredicted RBP13.91□□□□□ -0.18
TRIM28-209ENST00000597423 CNR1P21554 472 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 ELAVL4P26378 380 aaKnown RBP13.91□□□□□ -0.18
TRIM28-209ENST00000597423 HTR2AP28223 471 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 RBM34P42696 430 aaKnown RBP13.91□□□□□ -0.18
TRIM28-209ENST00000597423 LIMS1P48059 325 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 FOXD4Q12950 439 aaPredicted RBP13.91□□□□□ -0.18
TRIM28-209ENST00000597423 PPP1R8Q12972 351 aaKnown RBP13.91□□□□□ -0.18
TRIM28-209ENST00000597423 TUBA3CQ13748 450 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 TUBA3EQ6PEY2 450 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 TTC33Q6PID6 262 aaPredicted RBP13.91□□□□□ -0.18
TRIM28-209ENST00000597423 CBLN3Q6UW01 205 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 TMEM179BQ7Z7N9 219 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 OR4K17Q8NGC6 315 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 GPR119Q8TDV5 335 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 ST8SIA1Q92185 356 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 HAS2Q92819 552 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 FRMD6Q96NE9 622 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 PSD2Q9BQI7 771 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 RTN4RQ9BZR6 473 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 Q9H521 79 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 ANKRD10Q9NXR5 420 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 VNN3Q9NY84 501 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 USE1Q9NZ43 259 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 KCNMB2Q9Y691 235 aa13.91□□□□□ -0.18
TRIM28-209ENST00000597423 A0A087WZY1 265 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 OR5H15A6NDH6 313 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 ELOA3DA6NLF2 546 aaPredicted RBP13.9□□□□□ -0.18
TRIM28-209ENST00000597423 SOCS2O14508 198 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 EI24O14681 340 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 OIP5O43482 229 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 CDC40O60508 579 aaKnown RBP eCLIP13.9□□□□□ -0.18
TRIM28-209ENST00000597423 WDPCPO95876 746 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 CCL3P10147 92 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 PRKACGP22612 351 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 ZNF41P51814 821 aaPredicted RBP13.9□□□□□ -0.18
TRIM28-209ENST00000597423 MAP2K6P52564 334 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 ARG2P78540 354 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 PLAURQ03405 335 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 OR1C1Q15619 314 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 ELOA3BQ3SY89 546 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 ZNF468Q5VIY5 522 aaPredicted RBP13.9□□□□□ -0.18
TRIM28-209ENST00000597423 IZUMO2Q6UXV1 221 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 MBOAT2Q6ZWT7 520 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 PLCZ1Q86YW0 608 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 EPHX4Q8IUS5 362 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 SPACA3Q8IXA5 215 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 PSD4Q8NDX1 1056 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 ELOA3Q8NG57 546 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 OR1J4Q8NGS1 313 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 PIGXQ8TBF5 258 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 SLC7A13Q8TCU3 470 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 TMEM239Q8WW34 195 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 TM9SF4Q92544 642 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 TMEM41AQ96HV5 264 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 C5orf34Q96MH7 638 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 FEVQ99581 238 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 ZNF184Q99676 751 aaPredicted RBP13.9□□□□□ -0.18
TRIM28-209ENST00000597423 SLC29A1Q99808 456 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 DSN1Q9H410 356 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 GALNT9Q9HCQ5 603 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 MED11Q9P086 117 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 NTNG1Q9Y2I2 539 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 MED31Q9Y3C7 131 aa13.9□□□□□ -0.18
TRIM28-209ENST00000597423 TRBV4-1A0A0J9YWV2 114 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 C2orf72A6NCS6 295 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 CBR3O75828 277 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 ALPLP05186 524 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 GSTM3P21266 225 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 CXCR1P25024 350 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms