RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 SELENONQ9NZV5 590 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 BOKQ9UMX3 212 aaPredicted RBP9.79□□□□□ -0.84
SS18-213ENST00000579640 ACACBO00763 2458 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 TRAV17A0A0B4J275 112 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 A0A0B4J2E0 115 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 A0A1B0GX12 115 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 A0A1W2PRQ8 180 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 C2orf72A6NCS6 295 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 FAM47E-STBD1D6RA91 191 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 KLRC4-KLRK1H3BQV0 150 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 FFAR1O14842 300 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 ADAM11O75078 769 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 GADD45GO95257 159 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 NUDT14O95848 222 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 DNAJA1P31689 397 aaKnown RBP9.78□□□□□ -0.84
SS18-213ENST00000579640 ARHGDIAP52565 204 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 HMGA2P52926 109 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 DGCR6Q14129 220 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 GANABQ14697 944 aaKnown RBP9.78□□□□□ -0.84
SS18-213ENST00000579640 TRAM2Q15035 370 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 HMBOX1Q6NT76 420 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 ULK3Q6PHR2 472 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 AMIGO2Q86SJ2 522 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 WDSUB1Q8N9V3 476 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 OR2M3Q8NG83 312 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 ST8SIA1Q92185 356 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 NRBF2Q96F24 287 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 SLC41A3Q96GZ6 507 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 DSN1Q9H410 356 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 NMNAT1Q9HAN9 279 aaPredicted RBP9.78□□□□□ -0.84
SS18-213ENST00000579640 C12orf10Q9HB07 376 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 TAS2R10Q9NYW0 307 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 MED11Q9P086 117 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 STOML1Q9UBI4 398 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 NKX1-2Q9UD57 310 aaPredicted RBP9.78□□□□□ -0.84
SS18-213ENST00000579640 SAMHD1Q9Y3Z3 626 aaKnown RBP9.78□□□□□ -0.84
SS18-213ENST00000579640 TESMINQ9Y4I5 508 aa9.78□□□□□ -0.84
SS18-213ENST00000579640 A0A087WZY1 265 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 A0A1B0GWA3 101 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 TNFRSF11BO00300 401 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 GNB5O14775 395 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 CASQ2O14958 399 aaPredicted RBP9.77□□□□□ -0.84
SS18-213ENST00000579640 CHP2O43745 196 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 CDC40O60508 579 aaKnown RBP eCLIP9.77□□□□□ -0.84
SS18-213ENST00000579640 E2F6O75461 281 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 CBR3O75828 277 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 GP1BBP13224 206 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 FPR1P21462 350 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 SLC1A3P43003 542 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 HTR3AP46098 478 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 IDH2P48735 452 aaKnown RBP9.77□□□□□ -0.84
SS18-213ENST00000579640 DNASE1L1P49184 302 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 ZNF41P51814 821 aaPredicted RBP9.77□□□□□ -0.84
SS18-213ENST00000579640 CDH12P55289 794 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 DLX5P56178 289 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 QPRTQ15274 297 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 ZNF766Q5HY98 468 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 FBXW10Q5XX13 1052 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 OR5M10Q6IEU7 315 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 GDF7Q7Z4P5 450 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 CADM2Q8N3J6 435 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 SVOPLQ8N434 492 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 OR2M7Q8NG81 312 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 OR5K1Q8NHB7 308 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 MPP4Q96JB8 637 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 PRR14Q9BWN1 585 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 SEMA6AQ9H2E6 1030 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 NTN4Q9HB63 628 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 ZFP64Q9NPA5 681 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 ACER3Q9NUN7 267 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 NTNG1Q9Y2I2 539 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 LYVE1Q9Y5Y7 322 aa9.77□□□□□ -0.84
SS18-213ENST00000579640 HEATR5AQ86XA9 2040 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 C17orf51A8MQB3 221 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 G3V3Y1 287 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 ETV2O00321 342 aaPredicted RBP9.77□□□□□ -0.85
SS18-213ENST00000579640 PEX1O43933 1283 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 PNMTP11086 282 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 LIMS1P48059 325 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 DSCR4P56555 118 aaPredicted RBP9.77□□□□□ -0.85
SS18-213ENST00000579640 ALG10BQ5I7T1 473 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 DCST1Q5T197 706 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 SHQ1Q6PI26 577 aaKnown RBP9.77□□□□□ -0.85
SS18-213ENST00000579640 GRINAQ7Z429 371 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 TSPYL5Q86VY4 417 aaPredicted RBP9.77□□□□□ -0.85
SS18-213ENST00000579640 HIPK1Q86Z02 1210 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 SULF2Q8IWU5 870 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 LINC00471Q8N535 108 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 FAM98AQ8NCA5 519 aaKnown RBP9.77□□□□□ -0.85
SS18-213ENST00000579640 OR4C15Q8NGM1 316 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 SLC38A4Q969I6 547 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 C3orf49Q96BT1 292 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 SDCCAG3Q96C92 435 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 C1GALT1C1Q96EU7 318 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 JSRP1Q96MG2 331 aaPredicted RBP9.77□□□□□ -0.85
SS18-213ENST00000579640 ALPK1Q96QP1 1244 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 OSBPL10Q9BXB5 764 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 ADAM19Q9H013 955 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 C8orf4Q9NR00 106 aa9.77□□□□□ -0.85
SS18-213ENST00000579640 CTPS2Q9NRF8 586 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms