RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 DNAJB6O75190 326 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 NFATC1O95644 943 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 PRR23D2P0DMB1 279 aaPredicted RBP12.25□□□□□ -0.45
CLN3-210ENST00000563874 ZNF250P15622 560 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 PRKACBP22694 351 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 SIM1P81133 766 aaPredicted RBP12.25□□□□□ -0.45
CLN3-210ENST00000563874 BDH1Q02338 343 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 PYHIN1Q6K0P9 492 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 FIP1L1Q6UN15 594 aaKnown RBP12.25□□□□□ -0.45
CLN3-210ENST00000563874 ARL14Q8N4G2 192 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 OR2L3Q8NG85 312 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 NR4A3Q92570 626 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 AHCYL2Q96HN2 611 aaKnown RBP12.25□□□□□ -0.45
CLN3-210ENST00000563874 HS6ST2Q96MM7 605 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 EVA1BQ9NVM1 165 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 MRPS23Q9Y3D9 190 aaKnown RBP12.25□□□□□ -0.45
CLN3-210ENST00000563874 SPEF1Q9Y4P9 236 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 VCANP13611 3396 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 LOC105371267A0A1B0GV96 52 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 TBC1D3BA6NDS4 549 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 I3L521 148 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 PEX12O00623 359 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 RAF1P04049 648 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 LINC00271P0C7V0 271 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 SOX9P48436 509 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 VSX2P58304 361 aaPredicted RBP12.25□□□□□ -0.45
CLN3-210ENST00000563874 FOXK2Q01167 660 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 ST3GAL2Q16842 350 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 ZNF782Q6ZMW2 699 aaPredicted RBP12.25□□□□□ -0.45
CLN3-210ENST00000563874 LUZP2Q86TE4 346 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 OR51L1Q8NGJ5 315 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 SUSD6Q92537 303 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 ORAI1Q96D31 301 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 PEX11GQ96HA9 241 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 DHRS9Q9BPW9 319 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 RANBP3Q9H6Z4 567 aaPredicted RBP12.25□□□□□ -0.45
CLN3-210ENST00000563874 WDR26Q9H7D7 661 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 HEXA-AS1Q9H8Q6 139 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 BRD7Q9NPI1 651 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 CLDND1Q9NY35 253 aa12.25□□□□□ -0.45
CLN3-210ENST00000563874 CXXC1Q9P0U4 656 aaPredicted RBP12.25□□□□□ -0.45
CLN3-210ENST00000563874 USP36Q9P275 1121 aaKnown RBP12.25□□□□□ -0.45
CLN3-210ENST00000563874 SSNA1O43805 119 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 ATF1P18846 271 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 RAB3BP20337 219 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 GALP22466 123 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 PEBP1P30086 187 aaKnown RBP12.24□□□□□ -0.45
CLN3-210ENST00000563874 HTRA3P83110 453 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 CRMP1Q14194 572 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 TP53I3Q53FA7 332 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 TJAP1Q5JTD0 557 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 ALKBH2Q6NS38 261 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 ADGRD2Q7Z7M1 963 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 ETFBKMTQ8IXQ9 262 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 MRPL43Q8N983 215 aaKnown RBP12.24□□□□□ -0.45
CLN3-210ENST00000563874 ZCCHC10Q8TBK6 192 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 GRHL3Q8TE85 626 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 TMEM239Q8WW34 195 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 PIGKQ92643 395 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 AUNIPQ9H7T9 357 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 MTHFD2LQ9H903 347 aaPredicted RBP12.24□□□□□ -0.45
CLN3-210ENST00000563874 CACYBPQ9HB71 228 aaKnown RBP12.24□□□□□ -0.45
CLN3-210ENST00000563874 CAPN10Q9HC96 672 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 ADAP2Q9NPF8 381 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 SLC27A6Q9Y2P4 619 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 PLPP2O43688 288 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 TRMT12Q53H54 448 aaKnown RBP12.24□□□□□ -0.45
CLN3-210ENST00000563874 MTSS1LQ765P7 747 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 SPRED2Q7Z698 418 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 BRIX1Q8TDN6 353 aaKnown RBP12.24□□□□□ -0.45
CLN3-210ENST00000563874 POF1BQ8WVV4 589 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 KCTD12Q96CX2 325 aaKnown RBP12.24□□□□□ -0.45
CLN3-210ENST00000563874 PGLYRP3Q96LB9 341 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 JAM3Q9BX67 310 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 EMC7Q9NPA0 242 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 EIF3KQ9UBQ5 218 aaKnown RBP12.24□□□□□ -0.45
CLN3-210ENST00000563874 SERGEFQ9UGK8 458 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 ACSL5Q9ULC5 683 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 NUBP2Q9Y5Y2 271 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 MID1O15344 667 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 WNT1P04628 370 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 SBK2P0C263 348 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 ZNF888P0CJ79 500 aaPredicted RBP12.24□□□□□ -0.45
CLN3-210ENST00000563874 ZNF85Q03923 595 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 RGS1Q08116 209 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 OR1Q1Q15612 314 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 LGALSLQ3ZCW2 172 aaPredicted RBP12.24□□□□□ -0.45
CLN3-210ENST00000563874 MRPL2Q5T653 305 aaKnown RBP12.24□□□□□ -0.45
CLN3-210ENST00000563874 NRROSQ86YC3 692 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 TMEFF1Q8IYR6 380 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 SPERTQ8NA61 448 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 CEP76Q8TAP6 659 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 SMPDL3BQ92485 455 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 CAPNS2Q96L46 248 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 TMEM74BQ9NUR3 256 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 FLVCR2Q9UPI3 526 aa12.24□□□□□ -0.45
CLN3-210ENST00000563874 AK6Q9Y3D8 172 aaKnown RBP12.24□□□□□ -0.45
CLN3-210ENST00000563874 TRAPPC13A5PLN9 417 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 FAM86C2PA6NEL3 165 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 GPR171O14626 319 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms