RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 ATP5J2P56134 94 aa16.91■□□□□ 0.3
VPS35-202ENST00000561713 CHI3L2Q15782 390 aa16.91■□□□□ 0.3
VPS35-202ENST00000561713 LSM12Q3MHD2 195 aaKnown RBP16.91■□□□□ 0.3
VPS35-202ENST00000561713 BEX5Q5H9J7 111 aa16.91■□□□□ 0.3
VPS35-202ENST00000561713 EMBQ6PCB8 327 aa16.91■□□□□ 0.3
VPS35-202ENST00000561713 NUFIP2Q7Z417 695 aaKnown RBP16.91■□□□□ 0.3
VPS35-202ENST00000561713 HMGN2P46Q86SG4 172 aa16.91■□□□□ 0.3
VPS35-202ENST00000561713 NUDCD3Q8IVD9 361 aa16.91■□□□□ 0.3
VPS35-202ENST00000561713 ZNF619Q8N2I2 560 aa16.91■□□□□ 0.3
VPS35-202ENST00000561713 MAPK1IP1LQ8NDC0 245 aa16.91■□□□□ 0.3
VPS35-202ENST00000561713 CXorf56Q9H5V9 222 aa16.91■□□□□ 0.3
VPS35-202ENST00000561713 PLSCR4Q9NRQ2 329 aa16.91■□□□□ 0.3
VPS35-202ENST00000561713 PAQR5Q9NXK6 330 aaPredicted RBP16.91■□□□□ 0.3
VPS35-202ENST00000561713 A0A1W2PNR3 127 aa16.9■□□□□ 0.3
VPS35-202ENST00000561713 GTPBP1O00178 669 aaKnown RBP16.9■□□□□ 0.3
VPS35-202ENST00000561713 ZNF195O14628 629 aa16.9■□□□□ 0.3
VPS35-202ENST00000561713 CYP7B1O75881 506 aa16.9■□□□□ 0.3
VPS35-202ENST00000561713 KRT16P08779 473 aa16.9■□□□□ 0.3
VPS35-202ENST00000561713 UBL4AP11441 157 aa16.9■□□□□ 0.3
VPS35-202ENST00000561713 ATP12AP54707 1039 aa16.9■□□□□ 0.3
VPS35-202ENST00000561713 CARD18P57730 90 aa16.9■□□□□ 0.3
VPS35-202ENST00000561713 GPR68Q15743 365 aa16.9■□□□□ 0.3
VPS35-202ENST00000561713 TMEM176BQ3YBM2 270 aaPredicted RBP16.9■□□□□ 0.3
VPS35-202ENST00000561713 PDSS1Q5T2R2 415 aa16.9■□□□□ 0.3
VPS35-202ENST00000561713 MTERF4Q7Z6M4 381 aaKnown RBP16.9■□□□□ 0.3
VPS35-202ENST00000561713 GPR119Q8TDV5 335 aa16.9■□□□□ 0.3
VPS35-202ENST00000561713 ZFP90Q8TF47 636 aa16.9■□□□□ 0.3
VPS35-202ENST00000561713 PLPPR2Q96GM1 343 aa16.9■□□□□ 0.3
VPS35-202ENST00000561713 ROPN1BQ9BZX4 212 aaPredicted RBP16.9■□□□□ 0.3
VPS35-202ENST00000561713 C20orf27Q9GZN8 174 aa16.9■□□□□ 0.3
VPS35-202ENST00000561713 QRSL1Q9H0R6 528 aaKnown RBP16.9■□□□□ 0.3
VPS35-202ENST00000561713 ROPN1Q9HAT0 212 aaPredicted RBP16.9■□□□□ 0.3
VPS35-202ENST00000561713 HHATLQ9HCP6 504 aa16.9■□□□□ 0.3
VPS35-202ENST00000561713 NOP53Q9NZM5 478 aaKnown RBP16.9■□□□□ 0.3
VPS35-202ENST00000561713 KCNE5Q9UJ90 142 aa16.9■□□□□ 0.3
VPS35-202ENST00000561713 DTNAQ9Y4J8 743 aa16.9■□□□□ 0.3
VPS35-202ENST00000561713 CHD3Q12873 2000 aaKnown RBP16.9■□□□□ 0.3
VPS35-202ENST00000561713 H3BNH8 94 aa16.89■□□□□ 0.29
VPS35-202ENST00000561713 H6PDO95479 791 aa16.89■□□□□ 0.29
VPS35-202ENST00000561713 EIF1P41567 113 aaKnown RBP16.89■□□□□ 0.29
VPS35-202ENST00000561713 SUMO3P55854 103 aaPredicted RBP16.89■□□□□ 0.29
VPS35-202ENST00000561713 QPRTQ15274 297 aa16.89■□□□□ 0.29
VPS35-202ENST00000561713 TFAP2EQ6VUC0 442 aa16.89■□□□□ 0.29
VPS35-202ENST00000561713 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.89■□□□□ 0.29
VPS35-202ENST00000561713 TUSC5Q8IXB3 177 aa16.89■□□□□ 0.29
VPS35-202ENST00000561713 OR4A15Q8NGL6 344 aa16.89■□□□□ 0.29
VPS35-202ENST00000561713 S100PBPQ96BU1 408 aa16.89■□□□□ 0.29
VPS35-202ENST00000561713 MOAP1Q96BY2 351 aa16.89■□□□□ 0.29
VPS35-202ENST00000561713 SDF2Q99470 211 aa16.89■□□□□ 0.29
VPS35-202ENST00000561713 PRPF18Q99633 342 aaKnown RBP16.89■□□□□ 0.29
VPS35-202ENST00000561713 AKTIPQ9H8T0 292 aa16.89■□□□□ 0.29
VPS35-202ENST00000561713 KLHL13Q9P2N7 655 aa16.89■□□□□ 0.29
VPS35-202ENST00000561713 GPC6Q9Y625 555 aaPredicted RBP16.89■□□□□ 0.29
VPS35-202ENST00000561713 C9JVG2 144 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 RNF223E7ERA6 249 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 HS3ST1O14792 307 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 BCAS1O75363 584 aaPredicted RBP16.88■□□□□ 0.29
VPS35-202ENST00000561713 SOX30O94993 753 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 C1QCP02747 245 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 SERPINE1P05121 402 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 MATN1P21941 496 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 ENPP1P22413 925 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 CLDN8P56748 225 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 EMX2Q04743 252 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 SELENBP1Q13228 472 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 SKP2Q13309 424 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 FCRLAQ7L513 359 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 C6orf120Q7Z4R8 191 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 ATG4DQ86TL0 474 aaPredicted RBP16.88■□□□□ 0.29
VPS35-202ENST00000561713 STK32CQ86UX6 486 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 ZNF611Q8N823 705 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 CPNE4Q96A23 557 aaPredicted RBP16.88■□□□□ 0.29
VPS35-202ENST00000561713 DNAJA3Q96EY1 480 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 REXO5Q96IC2 774 aaKnown RBP16.88■□□□□ 0.29
VPS35-202ENST00000561713 SORT1Q99523 831 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 HOXD1Q9GZZ0 328 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 OR51I1Q9H343 314 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 MKLN1Q9UL63 735 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 ACTL7BQ9Y614 415 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 PLCE1Q9P212 2302 aa16.88■□□□□ 0.29
VPS35-202ENST00000561713 ESPNB1AK53 854 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 ZNF264O43296 627 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 FCMRO60667 390 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 GCM2O75603 506 aaPredicted RBP16.87■□□□□ 0.29
VPS35-202ENST00000561713 CPSF4O95639 269 aaKnown RBP16.87■□□□□ 0.29
VPS35-202ENST00000561713 UBTFL6P0CB48 400 aaPredicted RBP16.87■□□□□ 0.29
VPS35-202ENST00000561713 PPP3CBP16298 524 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 BGNP21810 368 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 EDNRAP25101 427 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 SLC7A1P30825 629 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 C21orf58P58505 322 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 ABCE1P61221 599 aaKnown RBP16.87■□□□□ 0.29
VPS35-202ENST00000561713 DMTNQ08495 405 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 FUT5Q11128 374 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 TMEM201Q5SNT2 666 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 TNFAIP8L2Q6P589 184 aaPredicted RBP16.87■□□□□ 0.29
VPS35-202ENST00000561713 BEND4Q6ZU67 534 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 C16orf62Q7Z3J2 963 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 OR5W2Q8NH69 310 aa16.87■□□□□ 0.29
VPS35-202ENST00000561713 RAB3IL1Q8TBN0 382 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms