RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 PDZK1Q5T2W1 519 aa16.39■□□□□ 0.21
SNX1-208ENST00000559844 LINC00299Q6ZSB3 139 aa16.39■□□□□ 0.21
SNX1-208ENST00000559844 POGLUT1Q8NBL1 392 aa16.39■□□□□ 0.21
SNX1-208ENST00000559844 LGALS12Q96DT0 336 aa16.39■□□□□ 0.21
SNX1-208ENST00000559844 CLIP3Q96DZ5 547 aa16.39■□□□□ 0.21
SNX1-208ENST00000559844 LRR1Q96L50 414 aa16.39■□□□□ 0.21
SNX1-208ENST00000559844 ZPBPQ9BS86 351 aa16.39■□□□□ 0.21
SNX1-208ENST00000559844 SCNM1Q9BWG6 230 aa16.39■□□□□ 0.21
SNX1-208ENST00000559844 CDH10Q9Y6N8 788 aa16.39■□□□□ 0.21
SNX1-208ENST00000559844 SCN2AQ99250 2005 aa16.39■□□□□ 0.21
SNX1-208ENST00000559844 EFCAB9A8MZ26 197 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 AIREO43918 545 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 PIP5K1CO60331 668 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 ZNF28P17035 718 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 GPR4P46093 362 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 GCGRP47871 477 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 SERPINB10P48595 397 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 CLK1P49759 484 aaKnown RBP16.38■□□□□ 0.21
SNX1-208ENST00000559844 ENTPD1P49961 510 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 PGDP52209 483 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 CAMK2BQ13554 666 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 KLHL22Q53GT1 634 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 YOD1Q5VVQ6 348 aaPredicted RBP16.38■□□□□ 0.21
SNX1-208ENST00000559844 ZNF620Q6ZNG0 422 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 ZAR1Q86SH2 424 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 CMIPQ8IY22 773 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 CDK20Q8IZL9 346 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 SLC38A9Q8NBW4 561 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 OR8D4Q8NGM9 314 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 TMEM239Q8WW34 195 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 FGF11Q92914 225 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 HS6ST2Q96MM7 605 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 ZNF582Q96NG8 517 aaPredicted RBP16.38■□□□□ 0.21
SNX1-208ENST00000559844 LANCL2Q9NS86 450 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 MED17Q9NVC6 651 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 ERGIC3Q9Y282 383 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 TMEM5Q9Y2B1 443 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 PCDHGA3Q9Y5H0 932 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 MAU2Q9Y6X3 613 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 HRKO00198 91 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 DYRK3O43781 588 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 CPNE3O75131 537 aaKnown RBP16.38■□□□□ 0.21
SNX1-208ENST00000559844 LYPD3O95274 346 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 ATXN8OSP0DMR3 200 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 VBP1P61758 197 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.38■□□□□ 0.21
SNX1-208ENST00000559844 NPSR1Q6W5P4 371 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 ZNF550Q7Z398 422 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 MEX3DQ86XN8 651 aaKnown RBP16.38■□□□□ 0.21
SNX1-208ENST00000559844 ZNF614Q8N883 585 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 ZNF615Q8N8J6 731 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 C16orf52Q8NHV5 167 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 NDNFQ8TB73 568 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 PTCHD1Q96NR3 888 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 SLC46A1Q96NT5 459 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 YIPF2Q9BWQ6 316 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 TRIM2Q9C040 744 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 NRSN2Q9GZP1 204 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 FOXJ2Q9P0K8 574 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 CBLCQ9ULV8 474 aa16.38■□□□□ 0.21
SNX1-208ENST00000559844 A0A1B0GX78 115 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 PRODHO43272 600 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 NTN1O95631 604 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 IGKV1D-16P01601 117 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 HMGN1P05114 100 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 HBQ1P09105 142 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 RBMS1P29558 406 aaKnown RBP16.37■□□□□ 0.21
SNX1-208ENST00000559844 UGT2B10P36537 528 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 ATP12AP54707 1039 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 LSM3P62310 102 aaKnown RBP16.37■□□□□ 0.21
SNX1-208ENST00000559844 PRKCDQ05655 676 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 FGFBP1Q14512 234 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 MED22Q15528 200 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 ZNF829Q3KNS6 432 aaPredicted RBP16.37■□□□□ 0.21
SNX1-208ENST00000559844 C1orf189Q5VU69 101 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 RHBDD2Q6NTF9 364 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 QSOX2Q6ZRP7 698 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 OR4N2Q8NGD1 307 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 OIT3Q8WWZ8 545 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 BORCS5Q969J3 196 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 PLEKHA8Q96JA3 519 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 MND1Q9BWT6 205 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 MRPS18AQ9NVS2 196 aaKnown RBP16.37■□□□□ 0.21
SNX1-208ENST00000559844 ZNF223Q9UK11 482 aaPredicted RBP16.37■□□□□ 0.21
SNX1-208ENST00000559844 WASF3Q9UPY6 502 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 DTX4Q9Y2E6 619 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 OR10H1Q9Y4A9 318 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 UNC119BA6NIH7 251 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 C17orf105B2RV13 164 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 DSCR3O14972 297 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 STK17BO94768 372 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 RAB36O95755 333 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 INHBBP09529 407 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 CT45A8P0DMV1 189 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 CT45A9P0DMV2 189 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 RGS6P49758 472 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 TUBA1BP68363 451 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.37■□□□□ 0.21
SNX1-208ENST00000559844 TIMM50Q3ZCQ8 353 aa16.37■□□□□ 0.21
SNX1-208ENST00000559844 CT45A2Q5DJT8 189 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms