RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 NAT14Q8WUY8 206 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 GIMAP1Q8WWP7 306 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 CTNNBL1Q8WYA6 563 aaPredicted RBP2.46□□□□□ -2.02
VPS13C-208ENST00000559119 SLC35E1Q96K37 410 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 GSDMAQ96QA5 445 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 NICN1Q9BSH3 213 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 CNPY3Q9BT09 278 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 OSBPL10Q9BXB5 764 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 DDX47Q9H0S4 455 aaKnown RBP2.46□□□□□ -2.02
VPS13C-208ENST00000559119 STMN4Q9H169 189 aaPredicted RBP2.46□□□□□ -2.02
VPS13C-208ENST00000559119 DPH5Q9H2P9 285 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 PARVBQ9HBI1 364 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 NECAP2Q9NVZ3 263 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 FAM32AQ9Y421 112 aaKnown RBP2.46□□□□□ -2.02
VPS13C-208ENST00000559119 WSB1Q9Y6I7 421 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 NEXMIFQ5QGS0 1516 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 ATP8B3O60423 1300 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 ABCA8O94911 1581 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 CRB1P82279 1406 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 CCDC169A6NNP5 214 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 SERPINE3A8MV23 424 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 BTNL10A8MVZ5 291 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 A8MXQ7 604 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 SPECC1L-ADORA2AF8WAN1 911 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 GOLGA8TH3BQL2 631 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 ABCD4O14678 606 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 ATP9AO75110 1047 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 SUPT3HO75486 399 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 SURF6O75683 361 aaKnown RBP2.45□□□□□ -2.02
VPS13C-208ENST00000559119 BBOX1O75936 387 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 UBTFL1P0CB47 393 aaPredicted RBP2.45□□□□□ -2.02
VPS13C-208ENST00000559119 GOLGA8HP0CJ92 632 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 CRABP2P29373 138 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 HPDP32754 393 aaPredicted RBP2.45□□□□□ -2.02
VPS13C-208ENST00000559119 METAP1P53582 386 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 KCNK10P57789 538 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 MAGOHP61326 146 aaKnown RBP2.45□□□□□ -2.02
VPS13C-208ENST00000559119 CTAG1AP78358 180 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 PPIDQ08752 370 aaKnown RBP2.45□□□□□ -2.02
VPS13C-208ENST00000559119 PTK6Q13882 451 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 RCN1Q15293 331 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 UAP1Q16222 522 aaPredicted RBP2.45□□□□□ -2.02
VPS13C-208ENST00000559119 ZCWPW2Q504Y3 356 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 SMUG1Q53HV7 270 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 BOLA3Q53S33 107 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 TCHHL1Q5QJ38 904 aaPredicted RBP2.45□□□□□ -2.02
VPS13C-208ENST00000559119 LRRC38Q5VT99 294 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 SHQ1Q6PI26 577 aaKnown RBP2.45□□□□□ -2.02
VPS13C-208ENST00000559119 WDR59Q6PJI9 974 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 NLRP9Q7RTR0 991 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 PPP1R42Q7Z4L9 355 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 NANOGNBQ7Z5D8 188 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 SYVN1Q86TM6 617 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 SPATA24Q86W54 205 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 SNX32Q86XE0 403 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 KLHL7Q8IXQ5 586 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 KLHDC8AQ8IYD2 350 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 ST13P4Q8IZP2 240 aaPredicted RBP2.45□□□□□ -2.02
VPS13C-208ENST00000559119 GOT1L1Q8NHS2 421 aaPredicted RBP2.45□□□□□ -2.02
VPS13C-208ENST00000559119 MAGOHBQ96A72 148 aaKnown RBP2.45□□□□□ -2.02
VPS13C-208ENST00000559119 CDKN2AIPNLQ96HQ2 116 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 COG3Q96JB2 828 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 CAPZA3Q96KX2 299 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 ROPN1BQ9BZX4 212 aaPredicted RBP2.45□□□□□ -2.02
VPS13C-208ENST00000559119 CCSER1Q9C0I3 900 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 SRD5A3Q9H8P0 318 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 COPS7BQ9H9Q2 264 aaPredicted RBP2.45□□□□□ -2.02
VPS13C-208ENST00000559119 ROPN1Q9HAT0 212 aaPredicted RBP2.45□□□□□ -2.02
VPS13C-208ENST00000559119 SAR1AQ9NR31 198 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 NMRK1Q9NWW6 199 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 GIN1Q9NXP7 522 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 IL20Q9NYY1 176 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 UBAP1Q9NZ09 502 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 STX18Q9P2W9 335 aaKnown RBP2.45□□□□□ -2.02
VPS13C-208ENST00000559119 MTRRQ9UBK8 725 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 FAM153AQ9UHL3 310 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 RWDD2AQ9UIY3 292 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 CHMP2BQ9UQN3 213 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 POMT1Q9Y6A1 747 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 N4BP2Q86UW6 1770 aaPredicted RBP2.45□□□□□ -2.02
VPS13C-208ENST00000559119 A0A1W2PP64 1363 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 DEPDC5O75140 1603 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 IFT172Q9UG01 1749 aa2.45□□□□□ -2.02
VPS13C-208ENST00000559119 ERCC6L2Q5T890 1561 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 MROH7-TTC4A0A0A0MT08 1334 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 PCDH11XQ9BZA7 1347 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 TET3O43151 1660 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 CASZ1Q86V15 1759 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 NFAT5O94916 1531 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 ABCC1P33527 1531 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 ZFYVE16Q7Z3T8 1539 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 TULP4Q9NRJ4 1543 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 TSPOAP1O95153 1857 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 MROH1Q8NDA8 1641 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 NPIPA5A0A0B4J1W7 369 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 PVALEFA0A1B0GWK0 134 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 TTC26A0AVF1 554 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 A8MUI8 341 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 CENPBD1B2RD01 187 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 NPIPA5E9PKD4 350 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms