RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 SPANXN2Q5MJ10 180 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 GKN2Q86XP6 184 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 SIX5Q8N196 739 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 SPRYD4Q8WW59 207 aaPredicted RBP9.8□□□□□ -0.84
CUX1-217ENST00000558836 NEURL2Q9BR09 285 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 OR10A5Q9H207 317 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 SLC2A4RGQ9NR83 387 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 PNO1Q9NRX1 252 aaKnown RBP9.8□□□□□ -0.84
CUX1-217ENST00000558836 DNAJB12Q9NXW2 375 aaKnown RBP9.8□□□□□ -0.84
CUX1-217ENST00000558836 MED31Q9Y3C7 131 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 CNTRLQ7Z7A1 2325 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 C2orf92A0A1B0GVN3 265 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 C17orf51A8MQB3 221 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 LOC110117498-PIK3R3F6TDL0 507 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 SRPX2O60687 465 aaPredicted RBP9.8□□□□□ -0.84
CUX1-217ENST00000558836 PPP1R3DO95685 299 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 CPEP16870 476 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 CD1CP29017 333 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 BMP8BP34820 402 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 PI4KAP42356 2102 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 HCCSP53701 268 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 NIPAL1Q6NVV3 410 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 LINC00299Q6ZSB3 139 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 BMP8AQ7Z5Y6 402 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 CADM3Q8N126 398 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 NR4A3Q92570 626 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 PTP4A1Q93096 173 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 TEX12Q9BXU0 123 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 SACM1LQ9NTJ5 587 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 TBCCD1Q9NVR7 557 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 PCDHGB6Q9Y5F9 930 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 PEX16Q9Y5Y5 336 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 CD8B2A6NJW9 211 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 RHPN2P1A8MT19 583 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 ZNF670-ZNF695F2Z2N8 137 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 CLDN4O14493 209 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 BHLHE40O14503 412 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 IMPA2O14732 288 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 MAGEB4O15481 346 aaPredicted RBP9.79□□□□□ -0.84
CUX1-217ENST00000558836 SERPINI2O75830 405 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 DLGAP3O95886 979 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 CD8BP10966 210 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 DRD5P21918 477 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 FOXK2Q01167 660 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 ZCCHC12Q6PEW1 402 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 KIRREL2Q6UWL6 708 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 OAFQ86UD1 273 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 TMEM151BQ8IW70 566 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 PRR22Q8IZ63 422 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 OR52L1Q8NGH7 329 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 TSLPQ969D9 159 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 RFKQ969G6 155 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 PRRG3Q9BZD7 231 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 NRSN2Q9GZP1 204 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 SMURF1Q9HCE7 757 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 PDE7BQ9NP56 450 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 FGF20Q9NP95 211 aaPredicted RBP9.79□□□□□ -0.84
CUX1-217ENST00000558836 TNFRSF10DQ9UBN6 386 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 MUTYHQ9UIF7 546 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 SIGLEC7Q9Y286 467 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 TMEM131Q92545 1883 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 ZDBF2Q9HCK1 2354 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 A0A0B4J2E0 115 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 A0A1B0GX12 115 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 C12orf71A8MTZ7 269 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 DCNP07585 359 aaKnown RBP9.79□□□□□ -0.84
CUX1-217ENST00000558836 GPR3P46089 330 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 RORCP51449 518 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 RACK1P63244 317 aaKnown RBP9.79□□□□□ -0.84
CUX1-217ENST00000558836 NXNL2Q5VZ03 156 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 SPATC1Q76KD6 591 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 IQCF2Q8IXL9 164 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 CDK20Q8IZL9 346 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 OR8H2Q8N162 312 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 TMEM99Q8N816 258 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 OR10H4Q8NGA5 316 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 AHCYL2Q96HN2 611 aaKnown RBP9.79□□□□□ -0.84
CUX1-217ENST00000558836 SDHCQ99643 169 aaPredicted RBP9.79□□□□□ -0.84
CUX1-217ENST00000558836 KLHDC3Q9BQ90 382 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 ARHGAP9Q9BRR9 750 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 ZNF649Q9BS31 505 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 OR8D2Q9GZM6 311 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 MRPS33Q9Y291 106 aaKnown RBP9.79□□□□□ -0.84
CUX1-217ENST00000558836 RNF215Q9Y6U7 377 aa9.79□□□□□ -0.84
CUX1-217ENST00000558836 C17orf105B2RV13 164 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 TMEM150CB9EJG8 249 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 SNX4O95219 450 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 NSA2O95478 260 aaKnown RBP9.78□□□□□ -0.84
CUX1-217ENST00000558836 ENDOUP21128 410 aaKnown RBP9.78□□□□□ -0.84
CUX1-217ENST00000558836 PAICSP22234 425 aaKnown RBP9.78□□□□□ -0.84
CUX1-217ENST00000558836 HTR1FP30939 366 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 CCR4P51679 360 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 PRKCDQ05655 676 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 COL13A1Q5TAT6 717 aaPredicted RBP9.78□□□□□ -0.84
CUX1-217ENST00000558836 C1orf189Q5VU69 101 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 SHISA6Q6ZSJ9 500 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 UTS2BQ765I0 119 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 BCORP1Q8N888 145 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 SLC37A3Q8NCC5 494 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 UFD1Q92890 307 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms