RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	FABP6	P51161	128 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	P2RX1	P51575	399 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	LSM11	P83369	360 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	ZNF117	Q03924	483 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	RASGEF1B	Q0VAM2	473 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	ARL13A	Q5H913	290 aa	Predicted RBP	11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	BEND6	Q5SZJ8	279 aa	Predicted RBP	11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	CCNJ	Q5T5M9	372 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	ANKRD26P1	Q6NSI1	321 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	SLC22A25	Q6T423	547 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	TMEM108	Q6UXF1	575 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	LRIG3	Q6UXM1	1119 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	DEPDC4	Q8N2C3	294 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	MUC15	Q8N387	334 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	ZNF525	Q8N782	197 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	CCNYL1	Q8N7R7	359 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	COX18	Q8N8Q8	333 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	FBXO30	Q8TB52	745 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	ZFP90	Q8TF47	636 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	C16orf58	Q96GQ5	468 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	METTL2A	Q96IZ6	378 aa	Known RBP	11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	MS4A4E	Q96PG1	132 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	PSD2	Q9BQI7	771 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	BTBD2	Q9BX70	525 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	HOXD1	Q9GZZ0	328 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	GSTO2	Q9H4Y5	243 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	MANSC1	Q9H8J5	431 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	NPAP1	Q9NZP6	1156 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	SH3BP4	Q9P0V3	963 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	ING1	Q9UK53	422 aa	Predicted RBP	11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	CARD8	Q9Y2G2	431 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	ACTL7B	Q9Y614	415 aa		11.18	□□□□□ -0.62
SHMT2-223	ENST00000556689	ALPK2	Q86TB3	2170 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689		A0A1W2PNR3	127 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689		H3BNH8	94 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689		H3BQF6	201 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	GTPBP1	O00178	669 aa	Known RBP	11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	CYTIP	O60759	359 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	CRCP	O75575	148 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	NUDT17	P0C025	328 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	DHRS4L1	P0CG22	281 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	IGHV4-31	P0DP07	118 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	USF1	P22415	310 aa	Predicted RBP	11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	PTAFR	P25105	342 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	SUMO3	P55854	103 aa	Predicted RBP	11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	POU6F2	P78424	691 aa	Predicted RBP	11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	CASP8	Q14790	479 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	KIAA0040	Q15053	153 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	KLHL26	Q53HC5	615 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	HSP90B2P	Q58FF3	399 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	KLHL17	Q6TDP4	642 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	CBLN3	Q6UW01	205 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	ZNF100	Q8IYN0	542 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	RIBC1	Q8N443	379 aa	Predicted RBP	11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	ZNF433	Q8N7K0	673 aa	Predicted RBP	11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	ARIH2OS	Q8N7S6	290 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	ZNF527	Q8NB42	609 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	GPR119	Q8TDV5	335 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	C10orf105	Q8TEF2	133 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	JADE3	Q92613	823 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	ZNF75CP	Q92670	426 aa	Predicted RBP	11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	HTRA1	Q92743	480 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	ARL8A	Q96BM9	186 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	PPCDC	Q96CD2	204 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	ZNF764	Q96H86	408 aa	Predicted RBP	11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	MRGPRX4	Q96LA9	322 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	TXLNGY	Q9BZA5	131 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	REEP4	Q9H6H4	257 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	COQ10B	Q9H8M1	238 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	VIPAS39	Q9H9C1	493 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	ACSS1	Q9NUB1	689 aa	Predicted RBP	11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	ICAM5	Q9UMF0	924 aa		11.17	□□□□□ -0.62
SHMT2-223	ENST00000556689	SVEP1	Q4LDE5	3571 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	CIB4	A0PJX0	185 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	ZNF724	A8MTY0	619 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	AKAP10	O43572	662 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	TBX19	O60806	448 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	GSTA1	P08263	222 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	CSF3	P09919	207 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	BMP4	P12644	408 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	PRKCA	P17252	672 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	COX5A	P20674	150 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	ATP6V1C1	P21283	382 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	EDNRA	P25101	427 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	CD40	P25942	277 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	FRK	P42685	505 aa	Predicted RBP	11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	GZMK	P49863	264 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	SRSF2	Q01130	221 aa	Known RBP	11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	SELENBP1	Q13228	472 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	TOMM34	Q15785	309 aa	Predicted RBP	11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	ZNF385B	Q569K4	471 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	GALNT5	Q7Z7M9	940 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	OR52N5	Q8NH56	324 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	CCDC126	Q96EE4	140 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	OTUB1	Q96FW1	271 aa	Predicted RBP	11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	CHMP6	Q96FZ7	201 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	ZNF300	Q96RE9	604 aa	Predicted RBP	11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	STAC	Q99469	402 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	PIGU	Q9H490	435 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	DUSP22	Q9NRW4	184 aa		11.16	□□□□□ -0.62

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