RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 MED31Q9Y3C7 131 aa13.53□□□□□ -0.24
VPS33B-205ENST00000556096 CDH10Q9Y6N8 788 aa13.53□□□□□ -0.24
VPS33B-205ENST00000556096 SEC16AO15027 2179 aa13.52□□□□□ -0.24
VPS33B-205ENST00000556096 SPAARA0A1B0GVQ0 90 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 UNC119BA6NIH7 251 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 H3BMQ9 156 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 CDC42EP2O14613 210 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 AHCYL1O43865 530 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 PRKYO43930 277 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 NOL3O60936 208 aaKnown RBP13.52□□□□□ -0.25
VPS33B-205ENST00000556096 CBFA2T3O75081 653 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 ALOX12BO75342 701 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 FADS2O95864 444 aaKnown RBP13.52□□□□□ -0.25
VPS33B-205ENST00000556096 STSP08842 583 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 LIMK1P53667 647 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 IRF3Q14653 427 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 ULK3Q6PHR2 472 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 PIP4P1Q86T03 277 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 C9orf43Q8TAL5 461 aaPredicted RBP13.52□□□□□ -0.25
VPS33B-205ENST00000556096 BRIX1Q8TDN6 353 aaKnown RBP13.52□□□□□ -0.25
VPS33B-205ENST00000556096 RAB2BQ8WUD1 216 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 COG8Q96MW5 612 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 SLC38A2Q96QD8 506 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 GAL3ST4Q96RP7 486 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 TSSK6Q9BXA6 273 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 CDCA4Q9BXL8 241 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 TEX12Q9BXU0 123 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 SEMA4CQ9C0C4 833 aa13.52□□□□□ -0.25
VPS33B-205ENST00000556096 PPIEQ9UNP9 301 aaKnown RBP13.52□□□□□ -0.25
VPS33B-205ENST00000556096 RPL36Q9Y3U8 105 aaKnown RBP13.52□□□□□ -0.25
VPS33B-205ENST00000556096 SCDO00767 359 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 SLC30A4O14863 429 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 TLX2O43763 284 aaPredicted RBP13.51□□□□□ -0.25
VPS33B-205ENST00000556096 PRKNO60260 465 aaPredicted RBP13.51□□□□□ -0.25
VPS33B-205ENST00000556096 TSPAN2O60636 221 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 CPNE3O75131 537 aaKnown RBP13.51□□□□□ -0.25
VPS33B-205ENST00000556096 NGFRP08138 427 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 IFI30P13284 250 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 HPGDP15428 266 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 MAKP20794 623 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 PCSK6P29122 969 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 C21orf33P30042 268 aaPredicted RBP13.51□□□□□ -0.25
VPS33B-205ENST00000556096 NR0B1P51843 470 aaKnown RBP13.51□□□□□ -0.25
VPS33B-205ENST00000556096 EMP2P54851 167 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 MC2RQ01718 297 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 NCF4Q15080 339 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 SNAPC1Q16533 368 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 ALG10BQ5I7T1 473 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 RPL13AP3Q6NVV1 102 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 CCDC81Q6ZN84 652 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 SHISA6Q6ZSJ9 500 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 ANKRD13BQ86YJ7 626 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 SLC34A3Q8N130 599 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 GALNT15Q8N3T1 639 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 NFAM1Q8NET5 270 aaPredicted RBP13.51□□□□□ -0.25
VPS33B-205ENST00000556096 PFN4Q8NHR9 129 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 TMEM163Q8TC26 289 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 RNF217Q8TC41 542 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 GRHL3Q8TE85 626 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 DNAJA4Q8WW22 397 aaPredicted RBP13.51□□□□□ -0.25
VPS33B-205ENST00000556096 METTL21AQ8WXB1 218 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 TP53INP1Q96A56 240 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 BPIFA2Q96DR5 249 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 CRELD1Q96HD1 420 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 CCNL2Q96S94 520 aaPredicted RBP13.51□□□□□ -0.25
VPS33B-205ENST00000556096 BCL7BQ9BQE9 202 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 FUNDC2Q9BWH2 189 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 NAA50Q9GZZ1 169 aaKnown RBP13.51□□□□□ -0.25
VPS33B-205ENST00000556096 FBXO8Q9NRD0 319 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 TBC1D23Q9NUY8 699 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 MED17Q9NVC6 651 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 RPS6KB2Q9UBS0 482 aa13.51□□□□□ -0.25
VPS33B-205ENST00000556096 WARS2Q9UGM6 360 aaKnown RBP13.51□□□□□ -0.25
VPS33B-205ENST00000556096 SAGE2PA6NJ88 616 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 AGRPO00253 132 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 MEN1O00255 615 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 TM4SF5O14894 197 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 REM1O75628 298 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 HMGN1P05114 100 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 ST13P50502 369 aaKnown RBP13.5□□□□□ -0.25
VPS33B-205ENST00000556096 PNLIPRP2P54317 469 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 CLDN6P56747 220 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 PLAG1Q6DJT9 500 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 FAAH2Q6GMR7 532 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 KIRREL2Q6UWL6 708 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 YIPF6Q96EC8 236 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 LRFN5Q96NI6 719 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 ADOQ96SZ5 270 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 DPH1Q9BZG8 443 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 GPN2Q9H9Y4 310 aaPredicted RBP13.5□□□□□ -0.25
VPS33B-205ENST00000556096 MEPEQ9NQ76 525 aaPredicted RBP13.5□□□□□ -0.25
VPS33B-205ENST00000556096 C20orf141Q9NUB4 165 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 DNAJC27Q9NZQ0 273 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 SELENONQ9NZV5 590 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 A0A1W2PQD3 144 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 RCBTB2O95199 551 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 UBL4AP11441 157 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 ENDOUP21128 410 aaKnown RBP13.5□□□□□ -0.25
VPS33B-205ENST00000556096 IL12BP29460 328 aa13.5□□□□□ -0.25
VPS33B-205ENST00000556096 NOVA1P51513 510 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms