RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PRODHO43272 600 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 GDF9O60383 454 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 MPZL2O60487 215 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 HCN1O60741 890 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 SULT1C4O75897 302 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 OR2B3O76000 313 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 CBX7O95931 251 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 HLA-DQA2P01906 255 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 PRR23D2P0DMB1 279 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 POU3F3P20264 500 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 CD38P28907 300 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 BMP8BP34820 402 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 OMPP47874 163 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 RORCP51449 518 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 NR0B1P51843 470 aaKnown RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 CTBP2P56545 445 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 WNT4P56705 351 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 OR10A3P58181 314 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 KIAA1024LP59773 190 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 TRA2BP62995 288 aaKnown RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 E2F1Q01094 437 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 TIMM50Q3ZCQ8 353 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 C1QL3Q5VWW1 255 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 KRT74Q7RTS7 529 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 BMP8AQ7Z5Y6 402 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 SERPINA12Q8IW75 414 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 NANOGP1Q8N7R0 232 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 C19orf47Q8N9M1 422 aaKnown RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 NEIL3Q8TAT5 605 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 TMEM163Q8TC26 289 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 CHPT1Q8WUD6 406 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 NMNAT3Q96T66 252 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 NEURL2Q9BR09 285 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 WACQ9BTA9 647 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 BTBD2Q9BX70 525 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 MMP27Q9H306 513 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 TTYH1Q9H313 450 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 PIGUQ9H490 435 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 CALML5Q9NZT1 146 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 PCDHGA3Q9Y5H0 932 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 SIRT4Q9Y6E7 314 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 BDP1A6H8Y1 2624 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 ICE1Q9Y2F5 2266 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 ROS1P08922 2347 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 SPTA1P02549 2419 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 TICRRQ7Z2Z1 1910 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 A0A087WV48 116 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 A0A1B0GTH9 108 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 A0A1W2PQ09 198 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 GPR89AB7ZAQ6 455 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 UPK1BO75841 260 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 OXSR1O95747 527 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 FBXO45P0C2W1 286 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 GPR89BP0CG08 455 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 LIMS3P0CW19 117 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 LIMS4P0CW20 117 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 RNH1P13489 461 aaKnown RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 RCVRNP35243 200 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 FRKP42685 505 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 SLC1A3P43003 542 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 CRYBB2P43320 205 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 SLC15A1P46059 708 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 CLDN12P56749 244 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 CCINQ13939 588 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 P2RY14Q15391 338 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 KLHL22Q53GT1 634 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 DMRTC1Q5HYR2 192 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 C12orf73Q69YU5 71 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 KIRREL2Q6UWL6 708 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 GDPD3Q7L5L3 318 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 KANSL1Q7Z3B3 1105 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 ATCAYQ86WG3 371 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 TDHQ8IZJ6 230 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 CDRT4Q8N9R6 151 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 SLC37A3Q8NCC5 494 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 C16orf52Q8NHV5 167 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 FLVCR1-AS1Q8TAF5 88 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 GCDHQ92947 438 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 ANKRD9Q96BM1 317 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 MSLNLQ96KJ4 702 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 KCTD7Q96MP8 289 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 POLDIP3Q9BY77 421 aaKnown RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 TMEM185BQ9H7F4 350 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 FOLH1BQ9HBA9 442 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 MEPEQ9NQ76 525 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 PLCXD1Q9NUJ7 323 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 C19orf53Q9UNZ5 99 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-215ENST00000552823 PCDHGB1Q9Y5G3 927 aa5.17□□□□□ -1.58
LIMA1-215ENST00000552823 PCNX3Q9H6A9 2034 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 A0A1W2PPC4 97 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 SHISA3A0PJX4 238 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 FAM86C2PA6NEL3 165 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 CYR61O00622 381 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 HCRTR2O43614 444 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 OR5F1O95221 314 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 ZGLP1P0C6A0 271 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 CHRNB1P11230 501 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 HOXB6P17509 224 aaKnown RBP5.16□□□□□ -1.58
LIMA1-215ENST00000552823 AQP2P41181 271 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 ZNF136P52737 540 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms