RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 COQ10BQ9H8M1 238 aa14.59□□□□□ -0.07
VPS29-207ENST00000549970 MEAF6Q9HAF1 191 aa14.59□□□□□ -0.07
VPS29-207ENST00000549970 TIGARQ9NQ88 270 aa14.59□□□□□ -0.07
VPS29-207ENST00000549970 EXD2Q9NVH0 621 aa14.59□□□□□ -0.07
VPS29-207ENST00000549970 MKLN1Q9UL63 735 aa14.59□□□□□ -0.07
VPS29-207ENST00000549970 ACANP16112 2415 aa14.58□□□□□ -0.07
VPS29-207ENST00000549970 SETD2Q9BYW2 2564 aaPredicted RBP14.58□□□□□ -0.08
VPS29-207ENST00000549970 EIF4E2O60573 245 aaKnown RBP14.58□□□□□ -0.08
VPS29-207ENST00000549970 UGT2B17O75795 530 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 PABPC4LP0CB38 370 aaKnown RBP14.58□□□□□ -0.08
VPS29-207ENST00000549970 OR12D1P0DN82 309 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 UQCRC2P22695 453 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 CLNS1AP54105 237 aaKnown RBP14.58□□□□□ -0.08
VPS29-207ENST00000549970 SELENBP1Q13228 472 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 ZNF141Q15928 474 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 FAM174BQ3ZCQ3 159 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 STAC2Q6ZMT1 411 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 STK32CQ86UX6 486 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 MIPOL1Q8TD10 442 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 MGARPQ8TDB4 240 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 RNF128Q8TEB7 428 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 XAGE5Q8WWM1 108 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 RAB8BQ92930 207 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 HS3ST6Q96QI5 342 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 THUMPD3Q9BV44 507 aaKnown RBP14.58□□□□□ -0.08
VPS29-207ENST00000549970 ZNF350Q9GZX5 532 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 UBTD1Q9HAC8 227 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 KCNE5Q9UJ90 142 aa14.58□□□□□ -0.08
VPS29-207ENST00000549970 A0A1W2PNR3 127 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 TMEM120BA0PK00 339 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 ESPNB1AK53 854 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 C9JVG2 144 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 E9PBE3 544 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 SDHDO14521 159 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 NTN1O95631 604 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 CSTAP01040 98 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 ALDOCP09972 364 aaKnown RBP14.57□□□□□ -0.08
VPS29-207ENST00000549970 UBTFL6P0CB48 400 aaPredicted RBP14.57□□□□□ -0.08
VPS29-207ENST00000549970 NID1P14543 1247 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 SLC7A1P30825 629 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 S100A3P33764 101 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 CHI3L1P36222 383 aaPredicted RBP14.57□□□□□ -0.08
VPS29-207ENST00000549970 WDR4P57081 412 aaKnown RBP14.57□□□□□ -0.08
VPS29-207ENST00000549970 SKP2Q13309 424 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 CASP8Q14790 479 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 DPY19L1Q2PZI1 675 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 TMEM201Q5SNT2 666 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 ATAD3BQ5T9A4 648 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 SAXO2Q658L1 398 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 HEPHL1Q6MZM0 1159 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 OGFOD2Q6N063 350 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 BEND4Q6ZU67 534 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 FCRLAQ7L513 359 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 TUSC5Q8IXB3 177 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 LRRC34Q8IZ02 419 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 WFDC11Q8NEX6 87 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 MARK4Q96L34 752 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 TEX37Q96LM6 180 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 SLC35A5Q9BS91 424 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 LAT2Q9GZY6 243 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 FANCFQ9NPI8 374 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 BEX4Q9NWD9 120 aaPredicted RBP14.57□□□□□ -0.08
VPS29-207ENST00000549970 MARCOQ9UEW3 520 aaPredicted RBP14.57□□□□□ -0.08
VPS29-207ENST00000549970 WDR45Q9Y484 360 aa14.57□□□□□ -0.08
VPS29-207ENST00000549970 IGHV3-15A0A0B4J1V0 119 aa14.56□□□□□ -0.08
VPS29-207ENST00000549970 KIAA0513O60268 411 aa14.56□□□□□ -0.08
VPS29-207ENST00000549970 AGR2O95994 175 aa14.56□□□□□ -0.08
VPS29-207ENST00000549970 THBDP07204 575 aa14.56□□□□□ -0.08
VPS29-207ENST00000549970 KHKP50053 298 aa14.56□□□□□ -0.08
VPS29-207ENST00000549970 UFM1P61960 85 aa14.56□□□□□ -0.08
VPS29-207ENST00000549970 FUT5Q11128 374 aa14.56□□□□□ -0.08
VPS29-207ENST00000549970 RNPS1Q15287 305 aaKnown RBP14.56□□□□□ -0.08
VPS29-207ENST00000549970 MAPK14Q16539 360 aa14.56□□□□□ -0.08
VPS29-207ENST00000549970 TIGD2Q4W5G0 525 aa14.56□□□□□ -0.08
VPS29-207ENST00000549970 SLC25A53Q5H9E4 307 aa14.56□□□□□ -0.08
VPS29-207ENST00000549970 TYW3Q6IPR3 259 aaKnown RBP14.56□□□□□ -0.08
VPS29-207ENST00000549970 EIF3MQ7L2H7 374 aaKnown RBP14.56□□□□□ -0.08
VPS29-207ENST00000549970 HMGN2P46Q86SG4 172 aa14.56□□□□□ -0.08
VPS29-207ENST00000549970 ROPN1LQ96C74 230 aa14.56□□□□□ -0.08
VPS29-207ENST00000549970 NEURL3Q96EH8 262 aa14.56□□□□□ -0.08
VPS29-207ENST00000549970 ACTR6Q9GZN1 396 aa14.56□□□□□ -0.08
VPS29-207ENST00000549970 QRSL1Q9H0R6 528 aaKnown RBP14.56□□□□□ -0.08
VPS29-207ENST00000549970 KLHL13Q9P2N7 655 aa14.56□□□□□ -0.08
VPS29-207ENST00000549970 GOLGA8QA0A0J9YX86 632 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 GOLGA8OA6NCC3 632 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 GOLGA8NF8WBI6 632 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 ETV2O00321 342 aaPredicted RBP14.55□□□□□ -0.08
VPS29-207ENST00000549970 C1QCP02747 245 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 KITP10721 976 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 PPP3CBP16298 524 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 ENPP1P22413 925 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 LOXP28300 417 aaPredicted RBP14.55□□□□□ -0.08
VPS29-207ENST00000549970 EPHA3P29320 983 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 SESN3P58005 492 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 GPAT3Q53EU6 434 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 C3orf33Q6P1S2 294 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 FRRS1Q6ZNA5 592 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 NUFIP2Q7Z417 695 aaKnown RBP14.55□□□□□ -0.08
VPS29-207ENST00000549970 CXorf67Q86X51 503 aaPredicted RBP14.55□□□□□ -0.08
VPS29-207ENST00000549970 WFDC8Q8IUA0 241 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms