RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ZCCHC3Q9NUD5 404 aaKnown RBP12.02□□□□□ -0.49
SS18-204ENST00000539244 FAIMQ9NVQ4 179 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 CISD1Q9NZ45 108 aaKnown RBP12.02□□□□□ -0.49
SS18-204ENST00000539244 TBK1Q9UHD2 729 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 BAIAP2L1Q9UHR4 511 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 ATP6V1HQ9UI12 483 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 YLPM1P49750 1951 aaKnown RBP12.01□□□□□ -0.49
SS18-204ENST00000539244 ZNF724A8MTY0 619 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 AZIN1O14977 448 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 CYTIPO60759 359 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 RAMP1O60894 148 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 PGM3O95394 542 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 NUDT14O95848 222 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 CPA3P15088 417 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 ATP6V1C1P21283 382 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 CCT5P48643 541 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 ATP12AP54707 1039 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 PPA1Q15181 289 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 NANOS1Q8WY41 292 aaKnown RBP12.01□□□□□ -0.49
SS18-204ENST00000539244 ZNF524Q96C55 264 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 C16orf45Q96MC5 204 aaPredicted RBP12.01□□□□□ -0.49
SS18-204ENST00000539244 HS6ST2Q96MM7 605 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 TRMOQ9BU70 441 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 ACTRT3Q9BYD9 372 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 YAE1D1Q9NRH1 226 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 PRSS50Q9UI38 385 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 GDF2Q9UK05 429 aaPredicted RBP12.01□□□□□ -0.49
SS18-204ENST00000539244 CARD8Q9Y2G2 431 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 DNAJC15Q9Y5T4 150 aa12.01□□□□□ -0.49
SS18-204ENST00000539244 IGHV3-15A0A0B4J1V0 119 aa12□□□□□ -0.49
SS18-204ENST00000539244 NPIPA5A0A0B4J1W7 369 aa12□□□□□ -0.49
SS18-204ENST00000539244 A8MV72 311 aaPredicted RBP12□□□□□ -0.49
SS18-204ENST00000539244 ESPNB1AK53 854 aa12□□□□□ -0.49
SS18-204ENST00000539244 NPIPA7E9PJI5 369 aa12□□□□□ -0.49
SS18-204ENST00000539244 SCAMP2O15127 329 aaKnown RBP12□□□□□ -0.49
SS18-204ENST00000539244 SMAD9O15198 467 aaKnown RBP12□□□□□ -0.49
SS18-204ENST00000539244 EIF4E2O60573 245 aaKnown RBP12□□□□□ -0.49
SS18-204ENST00000539244 DNAJA2O60884 412 aa12□□□□□ -0.49
SS18-204ENST00000539244 LYZL6O75951 148 aa12□□□□□ -0.49
SS18-204ENST00000539244 NPIPA8P0DM63 369 aa12□□□□□ -0.49
SS18-204ENST00000539244 BCKDHAP12694 445 aa12□□□□□ -0.49
SS18-204ENST00000539244 EFNA1P20827 205 aaPredicted RBP12□□□□□ -0.49
SS18-204ENST00000539244 EDNRAP25101 427 aa12□□□□□ -0.49
SS18-204ENST00000539244 SLC7A1P30825 629 aa12□□□□□ -0.49
SS18-204ENST00000539244 RPL3P39023 403 aaKnown RBP12□□□□□ -0.49
SS18-204ENST00000539244 CDH11P55287 796 aa12□□□□□ -0.49
SS18-204ENST00000539244 RASGEF1BQ0VAM2 473 aa12□□□□□ -0.49
SS18-204ENST00000539244 CHRFAM7AQ494W8 412 aa12□□□□□ -0.49
SS18-204ENST00000539244 ARL13AQ5H913 290 aaPredicted RBP12□□□□□ -0.49
SS18-204ENST00000539244 DCST2Q5T1A1 773 aa12□□□□□ -0.49
SS18-204ENST00000539244 KANK2Q63ZY3 851 aa12□□□□□ -0.49
SS18-204ENST00000539244 ZC3HAV1Q7Z2W4 902 aaKnown RBP12□□□□□ -0.49
SS18-204ENST00000539244 TOR1AIP2Q8NFQ8 470 aa12□□□□□ -0.49
SS18-204ENST00000539244 OR10H5Q8NGA6 315 aa12□□□□□ -0.49
SS18-204ENST00000539244 OR56A1Q8NGH5 318 aa12□□□□□ -0.49
SS18-204ENST00000539244 OR5W2Q8NH69 310 aa12□□□□□ -0.49
SS18-204ENST00000539244 TMEM158Q8WZ71 300 aa12□□□□□ -0.49
SS18-204ENST00000539244 ZNF75CPQ92670 426 aaPredicted RBP12□□□□□ -0.49
SS18-204ENST00000539244 MUCL1Q96DR8 90 aa12□□□□□ -0.49
SS18-204ENST00000539244 RADILQ96JH8 1075 aa12□□□□□ -0.49
SS18-204ENST00000539244 ANKZF1Q9H8Y5 726 aa12□□□□□ -0.49
SS18-204ENST00000539244 GPATCH2Q9NW75 528 aa12□□□□□ -0.49
SS18-204ENST00000539244 NPAP1Q9NZP6 1156 aa12□□□□□ -0.49
SS18-204ENST00000539244 B3GALT5Q9Y2C3 310 aa12□□□□□ -0.49
SS18-204ENST00000539244 DTNAQ9Y4J8 743 aa12□□□□□ -0.49
SS18-204ENST00000539244 IGHV4-30-2A0A087WSY4 118 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 A0A1W2PNR3 127 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 GTPBP1O00178 669 aaKnown RBP11.99□□□□□ -0.49
SS18-204ENST00000539244 ABCD4O14678 606 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 CHEK2O96017 543 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 FGF4P08620 206 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 KRT16P08779 473 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 LINC00032P0C843 101 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 GGT1P19440 569 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 IGHV1-2P23083 117 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 HPCAL1P37235 193 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 CCT3P49368 545 aaKnown RBP11.99□□□□□ -0.49
SS18-204ENST00000539244 C21orf58P58505 322 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 QPRTQ15274 297 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 STK11Q15831 433 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 UGT3A2Q3SY77 523 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 C6orf52Q5T4I8 152 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 AGAP6Q5VW22 663 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 C11orf71Q6IPW1 123 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 C3orf33Q6P1S2 294 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 IFT20Q8IY31 132 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 NATD1Q8N6N6 113 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 SFXN5Q8TD22 340 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 ADAMTS15Q8TE58 950 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 OR5P2Q8WZ92 322 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 CHMP6Q96FZ7 201 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 ZNF300Q96RE9 604 aaPredicted RBP11.99□□□□□ -0.49
SS18-204ENST00000539244 RHNO1Q9BSD3 238 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 GATA5Q9BWX5 397 aaPredicted RBP11.99□□□□□ -0.49
SS18-204ENST00000539244 TMEM160Q9NX00 188 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 MID2Q9UJV3 735 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 KCNE3Q9Y6H6 103 aa11.99□□□□□ -0.49
SS18-204ENST00000539244 IGKV3D-15A0A087WSY6 115 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 OR5H1A6NKK0 313 aa11.98□□□□□ -0.49
SS18-204ENST00000539244 ELOA3DA6NLF2 546 aaPredicted RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms