RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 RGS7BPQ6MZT1 257 aaPredicted RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 GUSBP11Q6P575 273 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 TUBA3EQ6PEY2 450 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 KLHL35Q6PF15 583 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 KLHL24Q6TFL4 600 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 CLEC9AQ6UXN8 241 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 DBX2Q6ZNG2 339 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ZNF551Q7Z340 670 aaPredicted RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 CAMKMTQ7Z624 323 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 DHFR2Q86XF0 187 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 STX12Q86Y82 276 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 CDH26Q8IXH8 852 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 KBTBD2Q8IY47 623 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 DNAJC22Q8N4W6 341 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 METTL27Q8N6F8 245 aaPredicted RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 EID2Q8N6I1 236 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 CSNK1A1LQ8N752 337 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ENDOVQ8N8Q3 282 aaKnown RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 Q8NA96 180 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 CAMKVQ8NCB2 501 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 SRFBP1Q8NEF9 429 aaKnown RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 OR8J3Q8NGG0 315 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 OR5T3Q8NGG3 340 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 OR5AK3PQ8NH89 298 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 NFKBIDQ8NI38 313 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 FAM81AQ8TBF8 368 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 NT5CQ8TCD5 201 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 SLC2A12Q8TD20 617 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ADAMTS17Q8TE56 1095 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 DOK4Q8TEW6 326 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ST8SIA2Q92186 375 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 TCEAL3Q969E4 200 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 INTS12Q96CB8 462 aaKnown RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 ASB9Q96DX5 294 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 TM4SF19Q96DZ7 209 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 LCORQ96JN0 433 aaPredicted RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 ZNF583Q96ND8 569 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 PANX1Q96RD7 426 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 CSF3RQ99062 836 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ATP6V0BQ99437 205 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 DPYSL5Q9BPU6 564 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ECSITQ9BQ95 431 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 CCDC3Q9BQI4 270 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 SLC35A5Q9BS91 424 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 GTPBP2Q9BX10 602 aaKnown RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 TRIM4Q9C037 500 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 TRIM2Q9C040 744 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ARRDC1-AS1Q9H2J1 176 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 DCLRE1BQ9H816 532 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 TPT1P8Q9HAU6 139 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 S100A14Q9HCY8 104 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 POLE3Q9NRF9 147 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 SDHAF3Q9NRP4 125 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 SOHLH2Q9NX45 425 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 LYARQ9NX58 379 aaKnown RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 BTNL2Q9UIR0 455 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 PAIP2BQ9ULR5 123 aaKnown RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 VPS4AQ9UN37 437 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ATG4BQ9Y4P1 393 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ASB4Q9Y574 426 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 KLK4Q9Y5K2 254 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 R4GN57 208 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 U3KQA8 63 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 CREBBPQ92793 2442 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 A0A1W2PRB8 838 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 C1orf226A1L170 272 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 EME2A4GXA9 379 aaPredicted RBP3.86□□□□□ -1.79
CD44-226ENST00000527889 EVPLLA8MZ36 301 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 FAM220BPB1ANY3 271 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 TMEM150CB9EJG8 249 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 HSBP1L1C9JCN9 74 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 NPIPB6E9PJ23 425 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 H3BNX3 289 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 SGK494L7N484 410 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 PDLIM1O00151 329 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 GTPBP1O00178 669 aaKnown RBP3.86□□□□□ -1.79
CD44-226ENST00000527889 CLIC1O00299 241 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 NUDT21O43809 227 aaKnown RBP3.86□□□□□ -1.79
CD44-226ENST00000527889 TPST1O60507 370 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 TBX19O60806 448 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 GUCY1B2O75343 617 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 FKBP6O75344 327 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 NME6O75414 186 aaPredicted RBP3.86□□□□□ -1.79
CD44-226ENST00000527889 RDH16O75452 317 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 SCELO95171 688 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 PNPP00491 289 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 MT-ND1P03886 318 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 RPLP0P05388 317 aaKnown RBP3.86□□□□□ -1.79
CD44-226ENST00000527889 SMIM10L1P0DMW3 83 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 NR2F6P10588 404 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 UBL4AP11441 157 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 ANPEPP15144 967 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 IL11P20809 199 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 CPN2P22792 545 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 HTR1EP28566 365 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 CD1CP29017 333 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 CNR2P34972 360 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 CHI3L1P36222 383 aaPredicted RBP3.86□□□□□ -1.79
CD44-226ENST00000527889 ARL3P36405 182 aa3.86□□□□□ -1.79
CD44-226ENST00000527889 FEN1P39748 380 aaKnown RBP3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms