RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-212ENST00000524922 ADNP2Q6IQ32 1131 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 SLC25A25Q6KCM7 469 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 CNSTQ6PJW8 725 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 SARM1Q6SZW1 724 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 SPESP1Q6UW49 350 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 C12orf54Q6X4T0 127 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 ZNF554Q86TJ5 538 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 SLC22A16Q86VW1 577 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 ZNF584Q8IVC4 421 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 ZNF547Q8IVP9 402 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 DNAJC22Q8N4W6 341 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 RAB42Q8N4Z0 105 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 GBP7Q8N8V2 638 aaPredicted RBP1.31□□□□□ -2.2
CD44-212ENST00000524922 ZNF540Q8NDQ6 660 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 KBTBD8Q8NFY9 601 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 OR8K3Q8NH51 312 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 OR1L3Q8NH93 324 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 CCL4L1Q8NHW4 92 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 PIH1D2Q8WWB5 315 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 ANKRD7Q92527 254 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 SMARCE1Q969G3 411 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 GLYATL1Q969I3 302 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 AP2M1Q96CW1 435 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 CXorf40BQ96DE9 158 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 C11orf24Q96F05 449 aaPredicted RBP1.31□□□□□ -2.2
CD44-212ENST00000524922 CCDC34Q96HJ3 373 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 RADILQ96JH8 1075 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 TGM7Q96PF1 710 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 NDNQ99608 321 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 CCL19Q99731 98 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 MAP3K3Q99759 626 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 UTP23Q9BRU9 249 aaKnown RBP1.31□□□□□ -2.2
CD44-212ENST00000524922 HGH1Q9BTY7 390 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 NUP85Q9BW27 656 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 TDRD1Q9BXT4 1180 aaKnown RBP1.31□□□□□ -2.2
CD44-212ENST00000524922 BEX2Q9BXY8 128 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 REG4Q9BYZ8 158 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 RTN4RQ9BZR6 473 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 TM6SF2Q9BZW4 377 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 SHARPINQ9H0F6 387 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 PPIL3Q9H2H8 161 aaKnown RBP1.31□□□□□ -2.2
CD44-212ENST00000524922 MMP27Q9H306 513 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 VPS37BQ9H9H4 285 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 CALHM2Q9HA72 323 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 HHATLQ9HCP6 504 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 SAMSN1Q9NSI8 373 aaKnown RBP1.31□□□□□ -2.2
CD44-212ENST00000524922 PIGVQ9NUD9 493 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 IMP3Q9NV31 184 aaKnown RBP1.31□□□□□ -2.2
CD44-212ENST00000524922 HRASLS2Q9NWW9 162 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 MED29Q9NX70 200 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP1.31□□□□□ -2.2
CD44-212ENST00000524922 PKD2L2Q9NZM6 624 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 ZNF282Q9UDV7 671 aaPredicted RBP1.31□□□□□ -2.2
CD44-212ENST00000524922 OR12D3Q9UGF7 316 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 SLC24A2Q9UI40 661 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 XPO7Q9UIA9 1087 aaKnown RBP1.31□□□□□ -2.2
CD44-212ENST00000524922 LCMT1Q9UIC8 334 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 SLC13A4Q9UKG4 626 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 IKZF3Q9UKT9 509 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 VANGL2Q9ULK5 521 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 NAP1L2Q9ULW6 460 aaPredicted RBP1.31□□□□□ -2.2
CD44-212ENST00000524922 PLCL2Q9UPR0 1127 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 EIF3LQ9Y262 564 aaKnown RBP1.31□□□□□ -2.2
CD44-212ENST00000524922 ITM2BQ9Y287 266 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 R3HDM2Q9Y2K5 976 aaKnown RBP1.31□□□□□ -2.2
CD44-212ENST00000524922 PTRH2Q9Y3E5 179 aaKnown RBP1.31□□□□□ -2.2
CD44-212ENST00000524922 FAM215AQ9Y5M1 114 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 SPIN1Q9Y657 262 aaPredicted RBP1.31□□□□□ -2.2
CD44-212ENST00000524922 SEC23IPQ9Y6Y8 1000 aaKnown RBP1.31□□□□□ -2.2
CD44-212ENST00000524922 ANKRD12Q6UB98 2062 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 NUP210LQ5VU65 1888 aa1.31□□□□□ -2.2
CD44-212ENST00000524922 KIAA1109Q2LD37 5005 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 HECTD4Q9Y4D8 3996 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 A0A087WWV3 80 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 A0A0J9YY10 115 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 SLC5A10A0PJK1 596 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 FAM170AA1A519 330 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 MGAT4DA6NG13 374 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 GOLGA8JA6NMD2 632 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 C15orf61A6NNL5 157 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 DEFB108AA8MXU0 73 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 A8MZ25 164 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 TMEM150CB9EJG8 249 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 CCDC188H7C350 402 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 H7C417 338 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 TRIM77I1YAP6 450 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 RNF103O00237 685 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 ZNF195O14628 629 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 CETN3O15182 167 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 EPHB6O15197 1021 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 KIF5CO60282 957 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 NDUFS3O75489 264 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 NXPH2O95156 264 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 OR2C1O95371 312 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 YEATS4O95619 227 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 GNA14O95837 355 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 MOCS2O96007 188 aaPredicted RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 RPN2P04844 631 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 HIST1H2ABP04908 130 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 CLEC3BP05452 202 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms