RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 ARSKQ6UWY0 536 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 NKAIN4Q8IVV8 208 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 UBQLNLQ8IYU4 475 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 OR5T3Q8NGG3 340 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 TNFRSF13CQ96RJ3 184 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 LYSMD1Q96S90 227 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 PPA2Q9H2U2 334 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 BABAM2Q9NXR7 383 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 NPAP1Q9NZP6 1156 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 TRAV18A0A075B6X5 111 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 RPS19P39019 145 aaKnown RBP10.93□□□□□ -0.66
SYNPO-204ENST00000519664 PTH2RP49190 550 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 TGM4P49221 684 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 AQP6Q13520 282 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 KIR2DS3Q14952 304 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 MSRB3Q8IXL7 192 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 CCL4L1Q8NHW4 92 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 NRTNQ99748 197 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 ATP13A2Q9NQ11 1180 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 TRPM6Q9BX84 2022 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 UNC13CQ8NB66 2214 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 H7C1C5 153 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 KLK3P07288 261 aaPredicted RBP10.93□□□□□ -0.66
SYNPO-204ENST00000519664 H2BFMP0C1H6 154 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 LCN6P62502 163 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 RASGEF1BQ0VAM2 473 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 ILKQ13418 452 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 FAM69BQ5VUD6 431 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 ABHD17CQ6PCB6 329 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 COMMD7Q86VX2 200 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 ZNF285Q96NJ3 590 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 SLC6A7Q99884 636 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 EPHA6Q9UF33 1036 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 NDRG4Q9ULP0 352 aaKnown RBP10.93□□□□□ -0.66
SYNPO-204ENST00000519664 ZNF443Q9Y2A4 671 aaPredicted RBP10.93□□□□□ -0.66
SYNPO-204ENST00000519664 TRBV5-4A0A0C4DH59 114 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 ZNF41P51814 821 aaPredicted RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 E2F1Q01094 437 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 PRKCDQ05655 676 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 MLLT11Q13015 90 aaPredicted RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 GRM7Q14831 915 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 TRMT12Q53H54 448 aaKnown RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 ALG10Q5BKT4 473 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 ACSM5Q6NUN0 579 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 ZNF765Q7L2R6 523 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 ZNF283Q8N7M2 679 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 THAP7Q9BT49 309 aaPredicted RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 TXNL4BQ9NX01 149 aaKnown RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 EDARQ9UNE0 448 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 A0A0X1KG70 313 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 A0A1B0GVI7 797 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 OR2A25A4D2G3 310 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 POLR1CO15160 346 aaPredicted RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 DOK2O60496 412 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 ACP2P11117 423 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 CD22P20273 847 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 SHC1P29353 583 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 SLC1A3P43003 542 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 GDI2P50395 445 aaKnown RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 TSPAN31Q12999 210 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 GPR18Q14330 331 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 GALEQ14376 348 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 TATDN3Q17R31 274 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 ESCO2Q56NI9 601 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 PRICKLE2Q7Z3G6 844 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 BTLAQ7Z6A9 289 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 PCNPQ8WW12 178 aaKnown RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 DHRS9Q9BPW9 319 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 C1QTNF2Q9BXJ5 285 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 RANGRFQ9HD47 186 aaPredicted RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 POT1Q9NUX5 634 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 COL24A1Q17RW2 1714 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 A0A1W2PR48 441 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 ACOD1A6NK06 481 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 WRBO00258 174 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 GABRPO00591 440 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 CD160O95971 181 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 CYB5AP00167 134 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 AK1P00568 194 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 FBLP22087 321 aaKnown RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 CTBP2P56545 445 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 CRMP1Q14194 572 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 ZNF77Q15935 545 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 METRNLQ641Q3 311 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 ANKRD54Q6NXT1 300 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 INO80EQ8NBZ0 244 aaPredicted RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 OR2T4Q8NH00 348 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 OR5J2Q8NH18 312 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 ZC3H10Q96K80 434 aaKnown RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 ZNF582Q96NG8 517 aaPredicted RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 DEFB126Q9BYW3 111 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 ARL6Q9H0F7 186 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 DUSP21Q9H596 190 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 TBC1D29Q9UFV1 150 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 DHDHQ9UQ10 334 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 HYKKA2RU49 373 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 LRIT2A6NDA9 550 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 CSTBP04080 98 aaKnown RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms