RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 NSDHLQ15738 373 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 DUSP7Q16829 419 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 PRSS53Q2L4Q9 553 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 TCTE1Q5JU00 501 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 LCN1P1Q5VSP4 162 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 CTRB2Q6GPI1 263 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 KIF18BQ86Y91 864 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 SLC38A9Q8NBW4 561 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 MYDGFQ969H8 173 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 WDR34Q96EX3 536 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 CRELD1Q96HD1 420 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 GON7Q9BXV9 100 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 ACOXLQ9NUZ1 547 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 THUMPD1Q9NXG2 353 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 COPZ2Q9P299 210 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 CDC14CA4D256 554 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 LINC01387J3KSC0 135 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 MASP2O00187 686 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 CLDN4O14493 209 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 ADAMDEC1O15204 470 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 FGF17O60258 216 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 GALR3O60755 368 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 SLC22A5O76082 557 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 ATG12O94817 140 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 KLK3P07288 261 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 FURINP09958 794 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 PRR35P0CG20 571 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 PRKAR1AP10644 381 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 RNH1P13489 461 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 DDOSTP39656 456 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 ETV5P41161 510 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 MAP2K3P46734 347 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 RPS18P62269 152 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 SLC35A2P78381 396 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 SPIBQ01892 262 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 RCAN2Q14206 197 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 CRTC2Q53ET0 693 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 LAIR2Q6ISS4 152 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 ZCCHC12Q6PEW1 402 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 IL20RBQ6UXL0 311 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 C17orf82Q86X59 251 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 MEX3DQ86XN8 651 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 PAPD5Q8NDF8 572 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 OR4K14Q8NGD5 310 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 OR5D16Q8NGK9 328 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 ARSGQ96EG1 525 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 SGTBQ96EQ0 304 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 C11orf24Q96F05 449 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 C10orf90Q96M02 699 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 USB1Q9BQ65 265 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 GPN3Q9UHW5 284 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 DAPP1Q9UN19 280 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 CFL2Q9Y281 166 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 MRPS33Q9Y291 106 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 HRH3Q9Y5N1 445 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 ASPDHA6ND91 283 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 TTLL8A6PVC2 850 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 B4DXG7 233 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 CLIC1O00299 241 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 MYL12BO14950 172 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 PRMT3O60678 531 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 MT-CO3P00414 261 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 NUDT7P0C024 238 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 FTH1P19P0C7X4 201 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 CSNK2A2P19784 350 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 KIR2DL3P43628 341 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 RFX2P48378 723 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 RGS6P49758 472 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 DAPP51397 102 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 ERVK-25P63136 954 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 SKP1P63208 163 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 SRSF11Q05519 484 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 ABHD18Q0P651 414 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 FOXC1Q12948 553 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 RNF130Q86XS8 419 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 VWA5B2Q8N398 1253 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 IL22RA1Q8N6P7 574 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 OR4D9Q8NGE8 314 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 OR5M3Q8NGP4 307 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 SERINC2Q96SA4 455 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 CD180Q99467 661 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 CLMPQ9H6B4 373 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 EPHA6Q9UF33 1036 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 TRBV23-1A0A0A0MS06 115 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 A0A0G2JPF8 293 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 HNRNPCL3B7ZW38 293 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 HNRNPCL4P0DMR1 293 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 ETFAP13804 333 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 MYL12AP19105 171 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 GZMKP49863 264 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 DUSP2Q05923 314 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 MAD2L1BPQ15013 274 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 RNF44Q7L0R7 432 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 ZNF680Q8NEM1 530 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 OR4M1Q8NGD0 313 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 SAP130Q9H0E3 1048 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 RANBP3Q9H6Z4 567 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 NUDT15Q9NV35 164 aa8.05□□□□□ -1.12
LIMCH1-209ENST00000509277 FRYQ5TBA9 3013 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 TCRBV5S2A0A599 114 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms