RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 CTDSP2O14595 271 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 MPPED1O15442 326 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 PRAMEF11O60813 436 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 SLC35E2BP0CK96 405 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 CR2P20023 1033 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 NME2P22392 152 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 F2RL1P55085 397 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 CTXN1P60606 82 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 ACY1Q03154 408 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 RAB33AQ14088 237 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 LRRC26Q2I0M4 334 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 SYT6Q5T7P8 510 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 DTX3Q8N9I9 347 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 NETO1Q8TDF5 533 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 C1orf74Q96LT6 269 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 CCDC74BQ96LY2 380 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 ALKBH4Q9NXW9 302 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 SPATA31A1Q5TZJ5 1347 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 C11orf98E9PRG8 122 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 H7BY64 318 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 M0R143 59 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 RNASET2O00584 256 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 ARAFP10398 606 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 FOLR1P15328 257 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 EPHA1P21709 976 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 NPBWR1P48145 328 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 TPPP2P59282 170 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 SEC61A1P61619 476 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 RGNQ15493 299 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 UGCGQ16739 394 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 DUSP28Q4G0W2 176 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 FAM182AQ5T1J6 154 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 WDR88Q6ZMY6 472 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 MEPCEQ7L2J0 689 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 ASPGQ86U10 573 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 DTWD1Q8N5C7 304 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 OR1J1Q8NGS3 322 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 NPRL2Q8WTW4 380 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 SFXN2Q96NB2 322 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 SCPEP1Q9HB40 452 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 PQBP1O60828 265 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 ACP5P13686 325 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 FDXRP22570 491 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 CCNOP22674 350 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 KLRK1P26718 216 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 CD52P31358 61 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 GDF5P43026 501 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 SGSHP51688 502 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 FAM74A1Q5RGS3 127 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 NBPF12Q5TAG4 269 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 CLEC9AQ6UXN8 241 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 NRG4Q8WWG1 115 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 SDSLQ96GA7 329 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 INTS14Q96SY0 518 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 TTTY10Q9BZA0 68 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 OR10A5Q9H207 317 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 OR10A2Q9H208 303 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 FZD8Q9H461 694 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 PGAP2Q9UHJ9 254 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 MSRAQ9UJ68 235 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 DNAJC15Q9Y5T4 150 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 IQGAP3Q86VI3 1631 aa10.58□□□□□ -0.72
LIMCH1-208ENST00000508501 HOXB5P09067 269 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 CD1EP15812 388 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 LTB4RQ15722 352 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 GTDC1Q4AE62 458 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 REM2Q8IYK8 340 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 OR4K13Q8NH42 304 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 DDIT4LQ96D03 193 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 GPR20Q99678 358 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 SLC35D1Q9NTN3 355 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 OSGIN1Q9UJX0 560 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 AGLP35573 1532 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 EDDM13A0A1B0GTR0 161 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 GABRPO00591 440 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 IL33O95760 270 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 GSRP00390 522 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 CSF3P09919 207 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 T-ENOLP0DO92 83 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 KCNE1P15382 129 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 HNF1AP20823 631 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 ACKR3P25106 362 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 CCKARP32238 428 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 RPS15AP62244 130 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 MS4A2Q01362 244 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 SBSNQ6UWP8 590 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 ADGRF3Q8IZF5 1079 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 TCTEX1D1Q8N7M0 179 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 OR1S2Q8NGQ3 325 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 DYNC2LI1Q8TCX1 351 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 LMF2Q9BU23 707 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 ST6GALNAC5Q9BVH7 336 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 OR8D2Q9GZM6 311 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 RAB18Q9NP72 206 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 SPATA31A5Q5VU36 1347 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 SPATA31A7Q8IWB4 1347 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 A0A087WUU8 490 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 LOC102725191A0A1B0GVB3 256 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 ZNF891A8MT65 544 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 ZNF780AO75290 641 aaPredicted RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms