RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 PTGFRNQ9P2B2 879 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ZNF624Q9P2J8 865 aaPredicted RBP14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 KLHL21Q9UJP4 597 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 CUL9Q8IWT3 2517 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 PRSS38A1L453 326 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SLC19A2O60779 497 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 CTSVO60911 334 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 AK4P27144 223 aaPredicted RBP14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 EFR3AQ14156 821 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 OR1Q1Q15612 314 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 DEFB134Q4QY38 66 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 EIPR1Q53HC9 387 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 LILRB1Q8NHL6 650 aaPredicted RBP14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 PTP4A1Q93096 173 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SERINC2Q96SA4 455 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 MARVELD1Q9BSK0 173 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 PIGUQ9H490 435 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SLA2Q9H6Q3 261 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ZNF304Q9HCX3 659 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 PHF11Q9UIL8 331 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 DAPP1Q9UN19 280 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 MAU2Q9Y6X3 613 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 FAM240BA0A1B0GVZ2 78 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 E9PI62 339 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SLC31A1O15431 190 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 CPMP14384 443 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 THBS2P35442 1172 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 AGFG1P52594 562 aaKnown RBP14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ID2Q02363 134 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 THSD4Q6ZMP0 1018 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 RANBP3LQ86VV4 465 aaPredicted RBP14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ZNF619Q8N2I2 560 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 LNX2Q8N448 690 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TMEM239Q8WW34 195 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ACOT12Q8WYK0 555 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 OR2M4Q96R27 311 aa14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 KRCC1Q9NPI7 259 aaPredicted RBP14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 C19orf53Q9UNZ5 99 aaPredicted RBP14.9□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 NPIPA5A0A0B4J1W7 369 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 A0A0G2JMP0 313 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 LOC102723532A0A0G2JNH3 316 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 A0A0X1KG70 313 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 POM121BA6NF01 834 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 OR6C70A6NIJ9 312 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 NPIPA7E9PJI5 369 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 PEX12O00623 359 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 NPIPA8P0DM63 369 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 IFI30P13284 250 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 PAICSP22234 425 aaKnown RBP14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 SHC1P29353 583 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 CTHP32929 405 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TAGLNQ01995 201 aaKnown RBP14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 PLAURQ03405 335 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 GALEQ14376 348 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 MRPL2Q5T653 305 aaKnown RBP14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 IDNKQ5T6J7 187 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 SAMD14Q8IZD0 417 aaPredicted RBP14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 RNF113BQ8IZP6 322 aaKnown RBP14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 OR4M2Q8NGB6 313 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 OR1E3Q8WZA6 343 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 AHCYL2Q96HN2 611 aaKnown RBP14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 CD180Q99467 661 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 DIABLOQ9NR28 239 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ACOXLQ9NUZ1 547 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 EXTL2Q9UBQ6 330 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ADAM30Q9UKF2 790 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 SLC22A7Q9Y694 548 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 SHISA7A6NL88 538 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 FAM25AB3EWG3 89 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 FAM25CB3EWG5 89 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 FAM25GB3EWG6 89 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TRIM3O75382 744 aaPredicted RBP14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 SLC43A1O75387 559 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 REM1O75628 298 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 EGFP01133 1207 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 SLC35G6P0C7Q6 338 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TFPIP10646 304 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 KIR2DL1P43626 348 aaPredicted RBP14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 ADPRHP54922 357 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 PPP2CBP62714 309 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 PPP2CAP67775 309 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 DCST2Q5T1A1 773 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TIGD3Q6B0B8 471 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 HBMQ6B0K9 141 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 FCRL6Q6DN72 434 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 SLC37A3Q8NCC5 494 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 OR5W2Q8NH69 310 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 CCL4L1Q8NHW4 92 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TWSG1Q9GZX9 223 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 CACYBPQ9HB71 228 aaKnown RBP14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 CYSLTR2Q9NS75 346 aa14.89□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 TRBV23OR9-2A0A075B6M9 112 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 CDHR4A6H8M9 788 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 K7EQS6 105 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 LANCL1O43813 399 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 DBIP07108 87 aaKnown RBP14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 NID1P14543 1247 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 NDUFS1P28331 727 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 FOXK2Q01167 660 aa14.88□□□□□ -0.03
MSH5-SAPCD1-208ENST00000498473 CSTF1Q05048 431 aaKnown RBP14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms