RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 BDH1Q02338 343 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 SDE2Q6IQ49 451 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 BMP8AQ7Z5Y6 402 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 SFTPA2Q8IWL1 248 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 CAMKVQ8NCB2 501 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 PTCHD1Q96NR3 888 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 ENAMQ9NRM1 1142 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 CMC2Q9NRP2 79 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 PILRAQ9UKJ1 303 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 A0A1W2PQF6 199 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 TNFSF14O43557 240 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 PPP1R3DO95685 299 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 PAHP00439 452 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 HOXB2P14652 356 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 PTBP1P26599 531 aaKnown RBP eCLIP16.61■□□□□ 0.25
VIM-206ENST00000487938 LSSP48449 732 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 AGFG1P52594 562 aaKnown RBP16.61■□□□□ 0.25
VIM-206ENST00000487938 HCCSP53701 268 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 CLDN20P56880 219 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 OR12D2P58182 307 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 TFF2Q03403 129 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 PLAURQ03405 335 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 RIN1Q13671 783 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 NFATC4Q14934 902 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 AMZ1Q400G9 498 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 SNAP47Q5SQN1 464 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 SYCE2Q6PIF2 218 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 CEACAM19Q7Z692 300 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 SAMD12Q8N8I0 201 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 CDRT4Q8N9R6 151 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 C17orf47Q8NEP4 570 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 OR4M1Q8NGD0 313 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 CNOT9Q92600 299 aaKnown RBP16.61■□□□□ 0.25
VIM-206ENST00000487938 C4orf36Q96KX1 117 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 WDR92Q96MX6 357 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 RASD1Q9Y272 281 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 MED31Q9Y3C7 131 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 ANKRD34BA5PLL1 514 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 SMLR1H3BR10 107 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 TFPIP10646 304 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 GALP22466 123 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 EFR3AQ14156 821 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 CRMP1Q14194 572 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 PRICKLE4Q2TBC4 344 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 C9orf50Q5SZB4 431 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 GARNL3Q5VVW2 1013 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 HBMQ6B0K9 141 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 TMPRSS11FQ6ZWK6 438 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 ABHD4Q8TB40 342 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 ACOT12Q8WYK0 555 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 RERGQ96A58 199 aaPredicted RBP16.61■□□□□ 0.25
VIM-206ENST00000487938 FAM131CQ96AQ9 280 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 TNFRSF13CQ96RJ3 184 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 ZMIZ1Q9ULJ6 1067 aa16.61■□□□□ 0.25
VIM-206ENST00000487938 F5P12259 2224 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 SGK494L7N484 410 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 MAGEB4O15481 346 aaPredicted RBP16.6■□□□□ 0.25
VIM-206ENST00000487938 PLOD3O60568 738 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 KLF8O95600 359 aaPredicted RBP16.6■□□□□ 0.25
VIM-206ENST00000487938 GPR75O95800 540 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 MT-ND5P03915 603 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 ATP1B1P05026 303 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 KIAA1024LP59773 190 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 DGAT2L6Q6ZPD8 337 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 OR5M3Q8NGP4 307 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 OR4C6Q8NH72 309 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 SIPA1Q96FS4 1042 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 AHCYL2Q96HN2 611 aaKnown RBP16.6■□□□□ 0.25
VIM-206ENST00000487938 ZFYVE21Q9BQ24 234 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 MARVELD1Q9BSK0 173 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 NDC1Q9BTX1 674 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 IL21RQ9HBE5 538 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 GALNT9Q9HCQ5 603 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 TRPV5Q9NQA5 729 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 DUSP22Q9NRW4 184 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 EVA1BQ9NVM1 165 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 DZANK1Q9NVP4 752 aa16.6■□□□□ 0.25
VIM-206ENST00000487938 ARHGEF17Q96PE2 2063 aaPredicted RBP16.6■□□□□ 0.25
VIM-206ENST00000487938 A0A1W2PPK0 400 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 SLC22A31A6NKX4 558 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 CYR61O00622 381 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 SCO2O43819 266 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 SBK2P0C263 348 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 ZNF10P21506 573 aaPredicted RBP16.59■□□□□ 0.25
VIM-206ENST00000487938 ACSL1P33121 698 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 POU6F2P78424 691 aaPredicted RBP16.59■□□□□ 0.25
VIM-206ENST00000487938 ZNF85Q03923 595 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 MGAT2Q10469 447 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 YIF1BQ5BJH7 314 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 ARL14Q8N4G2 192 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 OR13C5Q8NGS8 318 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 SMPDL3BQ92485 455 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 THAP7Q9BT49 309 aaPredicted RBP16.59■□□□□ 0.25
VIM-206ENST00000487938 TMEM27Q9HBJ8 222 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 ADGRL4Q9HBW9 690 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 KLHL1Q9NR64 748 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 CYSLTR2Q9NS75 346 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 FLRT3Q9NZU0 649 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 PCOLCE2Q9UKZ9 415 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 YBX2Q9Y2T7 364 aaKnown RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms