RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 GJE1A6NN92 205 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 H7C1Q1 480 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 ZNF264O43296 627 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 CYP7B1O75881 506 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 PABPC4LP0CB38 370 aaKnown RBP19.2■□□□□ 0.66
USP40-215ENST00000484528 MATN1P21941 496 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 ADH6P28332 368 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 QPRTQ15274 297 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 TMEM201Q5SNT2 666 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 GTF2IRD2BQ6EKJ0 949 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 FCRLAQ7L513 359 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 YTHDF3Q7Z739 585 aaKnown RBP19.2■□□□□ 0.66
USP40-215ENST00000484528 GTF2IRD2Q86UP8 949 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 ANKRD46Q86W74 232 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 AKTIPQ9H8T0 292 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 TIGARQ9NQ88 270 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 ASIC5Q9NY37 505 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 KLHL13Q9P2N7 655 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 KCNE5Q9UJ90 142 aa19.2■□□□□ 0.66
USP40-215ENST00000484528 FCMRO60667 390 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 SERPINE1P05121 402 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 PSMB1P20618 241 aaKnown RBP19.19■□□□□ 0.66
USP40-215ENST00000484528 ENPP1P22413 925 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 SLC7A1P30825 629 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 C21orf58P58505 322 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 SELENBP1Q13228 472 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 RNPS1Q15287 305 aaKnown RBP19.19■□□□□ 0.66
USP40-215ENST00000484528 BHLHB9Q6PI77 547 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 TFAP2EQ6VUC0 442 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 PLEKHM3Q6ZWE6 761 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 ZNF619Q8N2I2 560 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 TOR1AIP2Q8NFQ8 470 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 OR4A15Q8NGL6 344 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 OR5W2Q8NH69 310 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 S100PBPQ96BU1 408 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 MRGPRX4Q96LA9 322 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 TMEM109Q9BVC6 243 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 C20orf27Q9GZN8 174 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 QRSL1Q9H0R6 528 aaKnown RBP19.19■□□□□ 0.66
USP40-215ENST00000484528 MKLN1Q9UL63 735 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 GPR52Q9Y2T5 361 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 JMJD1CQ15652 2540 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 ABCA2Q9BZC7 2435 aa19.19■□□□□ 0.66
USP40-215ENST00000484528 TRIM64A6NGJ6 449 aa19.18■□□□□ 0.66
USP40-215ENST00000484528 SERINC4A6NH21 518 aa19.18■□□□□ 0.66
USP40-215ENST00000484528 TRIM64BA6NI03 449 aa19.18■□□□□ 0.66
USP40-215ENST00000484528 SMAD7O15105 426 aaKnown RBP19.18■□□□□ 0.66
USP40-215ENST00000484528 RGS16O15492 202 aaPredicted RBP19.18■□□□□ 0.66
USP40-215ENST00000484528 GCM2O75603 506 aaPredicted RBP19.18■□□□□ 0.66
USP40-215ENST00000484528 CPSF4O95639 269 aaKnown RBP19.18■□□□□ 0.66
USP40-215ENST00000484528 ABCE1P61221 599 aaKnown RBP19.18■□□□□ 0.66
USP40-215ENST00000484528 WDR93Q6P2C0 686 aa19.18■□□□□ 0.66
USP40-215ENST00000484528 C16orf62Q7Z3J2 963 aa19.18■□□□□ 0.66
USP40-215ENST00000484528 COX4I2Q96KJ9 171 aa19.18■□□□□ 0.66
USP40-215ENST00000484528 THUMPD3Q9BV44 507 aaKnown RBP19.18■□□□□ 0.66
USP40-215ENST00000484528 DPY30Q9C005 99 aa19.18■□□□□ 0.66
USP40-215ENST00000484528 OR51I1Q9H343 314 aa19.18■□□□□ 0.66
USP40-215ENST00000484528 ESPNB1AK53 854 aa19.17■□□□□ 0.66
USP40-215ENST00000484528 EIF4E2O60573 245 aaKnown RBP19.17■□□□□ 0.66
USP40-215ENST00000484528 PRKD3O94806 890 aa19.17■□□□□ 0.66
USP40-215ENST00000484528 SOX30O94993 753 aa19.17■□□□□ 0.66
USP40-215ENST00000484528 H6PDO95479 791 aa19.17■□□□□ 0.66
USP40-215ENST00000484528 UBTFL6P0CB48 400 aaPredicted RBP19.17■□□□□ 0.66
USP40-215ENST00000484528 PTH2RP49190 550 aa19.17■□□□□ 0.66
USP40-215ENST00000484528 NR1H2P55055 460 aa19.17■□□□□ 0.66
USP40-215ENST00000484528 SKP2Q13309 424 aa19.17■□□□□ 0.66
USP40-215ENST00000484528 CBFBQ13951 182 aa19.17■□□□□ 0.66
USP40-215ENST00000484528 TIGD2Q4W5G0 525 aa19.17■□□□□ 0.66
USP40-215ENST00000484528 GABRG1Q8N1C3 465 aa19.17■□□□□ 0.66
USP40-215ENST00000484528 RAB3IL1Q8TBN0 382 aa19.17■□□□□ 0.66
USP40-215ENST00000484528 RAB8BQ92930 207 aa19.17■□□□□ 0.66
USP40-215ENST00000484528 NMUR2Q9GZQ4 415 aa19.17■□□□□ 0.66
USP40-215ENST00000484528 DUXAA6NLW8 204 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 C9JVG2 144 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 RNASET2O00584 256 aaKnown RBP19.16■□□□□ 0.66
USP40-215ENST00000484528 STX11O75558 287 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 UGT2B17O75795 530 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 LY6G6DO95868 133 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 CSTAP01040 98 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 MYZAPP0CAP1 466 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 BGNP21810 368 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 IL32P24001 234 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 ZNF141Q15928 474 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 SMU1Q2TAY7 513 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 ARHGAP11BQ3KRB8 267 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 SLC25A53Q5H9E4 307 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 TNFAIP8L2Q6P589 184 aaPredicted RBP19.16■□□□□ 0.66
USP40-215ENST00000484528 ZC3HAV1Q7Z2W4 902 aaKnown RBP19.16■□□□□ 0.66
USP40-215ENST00000484528 HMGN2P46Q86SG4 172 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 LSRQ86X29 649 aaPredicted RBP19.16■□□□□ 0.66
USP40-215ENST00000484528 MREGQ8N565 214 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 STEAP2Q8NFT2 490 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 TMEM171Q8WVE6 324 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 ZNF775Q96BV0 537 aaPredicted RBP19.16■□□□□ 0.66
USP40-215ENST00000484528 ZIM3Q96PE6 472 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 OR5B2Q96R09 309 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 SORT1Q99523 831 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 TACO1Q9BSH4 297 aaKnown RBP19.16■□□□□ 0.66
USP40-215ENST00000484528 ZNF350Q9GZX5 532 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 CENPHQ9H3R5 247 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms