RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 OR7D2Q96RA2 312 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 C1orf50Q9BV19 199 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ROPN1BQ9BZX4 212 aaPredicted RBP10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 NMUR2Q9GZQ4 415 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ROPN1Q9HAT0 212 aaPredicted RBP10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 FANCFQ9NPI8 374 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TIGARQ9NQ88 270 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ATAD3AQ9NVI7 634 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ASIC5Q9NY37 505 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SNX8Q9Y5X2 465 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 FBN1P35555 2871 aaKnown RBP10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 CR1P17927 2039 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 EIF4E2O60573 245 aaKnown RBP10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SPAG7O75391 227 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 CNOT4O95628 575 aaKnown RBP10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 BPGMP07738 259 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 GUSBP08236 651 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 KRT16P08779 473 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 DANCRP0C864 163 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ATP6V1C1P21283 382 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ENPP1P22413 925 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 CLDN8P56748 225 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 EMX2Q04743 252 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 KRTAP1-1Q07627 177 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TP53BP2Q13625 1128 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 P2RY6Q15077 328 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TAB1Q15750 504 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SMU1Q2TAY7 513 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 NDUFAF6Q330K2 333 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 NCMAPQ5T1S8 102 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 HEPHL1Q6MZM0 1159 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 PPP4R4Q6NUP7 873 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 WDR93Q6P2C0 686 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 WFDC8Q8IUA0 241 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SLC43A2Q8N370 569 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TOR1AIP2Q8NFQ8 470 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 OR5W2Q8NH69 310 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 MIPOL1Q8TD10 442 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ZFP90Q8TF47 636 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ZIM3Q96PE6 472 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 PSD2Q9BQI7 771 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 DUSP26Q9BV47 211 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 C12orf49Q9H741 205 aa10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 FAF1Q9UNN5 650 aaPredicted RBP10.88□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 HEATR1Q9H583 2144 aaKnown RBP10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 YLPM1P49750 1951 aaKnown RBP10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 GJE1A6NN92 205 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 H3BNH8 94 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ZNF264O43296 627 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 FCMRO60667 390 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 G6PDP11413 515 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 EDNRAP25101 427 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 OR3A2P47893 321 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 RNF144AP50876 292 aaPredicted RBP10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 PHC1P78364 1004 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SELENBP1Q13228 472 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SKP2Q13309 424 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TSC22D1Q15714 1073 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ARHGAP11BQ3KRB8 267 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TMEM201Q5SNT2 666 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 EMBQ6PCB8 327 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 C6orf120Q7Z4R8 191 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 FNDC5Q8NAU1 212 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 FAM71CQ8NEG0 241 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 OR8J2Q8NGG1 315 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 OR5D16Q8NGK9 328 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 PIWIL2Q8TC59 973 aaKnown RBP10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 AGR3Q8TD06 166 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TMEM171Q8WVE6 324 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 HSD17B8Q92506 261 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 AKAP1Q92667 903 aaKnown RBP eCLIP10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 PRPF18Q99633 342 aaKnown RBP10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 USB1Q9BQ65 265 aaKnown RBP10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TMEM109Q9BVC6 243 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 LAT2Q9GZY6 243 aa10.87□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 CHD3Q12873 2000 aaKnown RBP10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 GOLGA8QA0A0J9YX86 632 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 CENPVL1A0A0U1RR11 272 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 A0A1W2PNR3 127 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 GOLGA8OA6NCC3 632 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SERINC4A6NH21 518 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 DUXAA6NLW8 204 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ZNF724A8MTY0 619 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 GOLGA8NF8WBI6 632 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 GTPBP1O00178 669 aaKnown RBP10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 RNASET2O00584 256 aaKnown RBP10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ANKRD28O15084 1053 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 CYTIPO60759 359 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 UGT2B17O75795 530 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 PGM3O95394 542 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 H6PDO95479 791 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ADAP00813 363 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SOD3P08294 240 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 MATN1P21941 496 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 VSNL1P62760 191 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ITGADQ13349 1161 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 QPRTQ15274 297 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 PDZK1Q5T2W1 519 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 BHLHB9Q6PI77 547 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 DNM1P46Q6ZS02 220 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms