RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 OR8J2Q8NGG1 315 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 OR5W2Q8NH69 310 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 ZFP90Q8TF47 636 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 ARSGQ96EG1 525 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 SLC35G5Q96KT7 338 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 MRGPRX4Q96LA9 322 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 SSU72Q9NP77 194 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 TIGARQ9NQ88 270 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 GJE1A6NN92 205 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 ANKRD28O15084 1053 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 RGS16O15492 202 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 ARHGEF9O43307 516 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 EIF4E2O60573 245 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 DNAJA2O60884 412 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 INHBBP09529 407 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 PABPC4LP0CB38 370 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 PHC1P78364 1004 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 SELENBP1Q13228 472 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 MPP2Q14168 576 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 QPRTQ15274 297 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 ZNF141Q15928 474 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 GTF2IRD2BQ6EKJ0 949 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 FCRLAQ7L513 359 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 NUFIP2Q7Z417 695 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 GTF2IRD2Q86UP8 949 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 TUSC5Q8IXB3 177 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 GABRG1Q8N1C3 465 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 RFWD2Q8NHY2 731 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 MIPOL1Q8TD10 442 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 ZNF350Q9GZX5 532 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 OR10A4Q9H209 315 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 HAO1Q9UJM8 370 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 ING1Q9UK53 422 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 RAP2CQ9Y3L5 183 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 USF3Q68DE3 2245 aa16.73■□□□□ 0.27
CCDC88B-206ENST00000473405 SERINC4A6NH21 518 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 TM9SF1O15321 606 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 UGT2B17O75795 530 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 AK1P00568 194 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 MYZAPP0CAP1 466 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 MATN1P21941 496 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 CCR4P51679 360 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 CASP9P55211 416 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 FUT5Q11128 374 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 CBFBQ13951 182 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 GPR68Q15743 365 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 ARHGAP11BQ3KRB8 267 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 HEPHL1Q6MZM0 1159 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 ZNF704Q6ZNC4 412 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 ANKRD46Q86W74 232 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 WFDC8Q8IUA0 241 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 P3H2Q8IVL5 708 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 ATP6V1C2Q8NEY4 427 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 TOR1AIP2Q8NFQ8 470 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 OR4A15Q8NGL6 344 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 TESCQ96BS2 214 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 S100PBPQ96BU1 408 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 PERPQ96FX8 193 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 REXO5Q96IC2 774 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 TMEM204Q9BSN7 226 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 OR51I1Q9H343 314 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 GP6Q9HCN6 339 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 FANCFQ9NPI8 374 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 MKLN1Q9UL63 735 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 GPR52Q9Y2T5 361 aa16.72■□□□□ 0.27
CCDC88B-206ENST00000473405 CSPG4Q6UVK1 2322 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 IGHV3-15A0A0B4J1V0 119 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 DUXAA6NLW8 204 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 KIAA0513O60268 411 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 STX11O75558 287 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 H6PDO95479 791 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 PLAUP00749 431 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 ENPP1P22413 925 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 SLC1A6P48664 564 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 NR1H2P55055 460 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 TSC22D1Q15714 1073 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 MAPK14Q16539 360 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 TNFAIP8L3Q5GJ75 292 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 TMEM201Q5SNT2 666 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 Q71RC1 249 aaPredicted RBP16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 CIARTQ8N365 385 aaPredicted RBP16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 FAM71CQ8NEG0 241 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 PLPPR2Q96GM1 343 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 COX4I2Q96KJ9 171 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 DPY30Q9C005 99 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 LAT2Q9GZY6 243 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 QRSL1Q9H0R6 528 aaKnown RBP16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 DNHD1Q96M86 4753 aa16.71■□□□□ 0.27
CCDC88B-206ENST00000473405 CADP27708 2225 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 A0A1W2PNR3 127 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 BCAS1O75363 584 aaPredicted RBP16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 PRKD3O94806 890 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 SNUPNO95149 360 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 YES1P07947 543 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 BGNP21810 368 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 ADSLP30566 484 aaPredicted RBP16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 SLC7A1P30825 629 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 RPL14P50914 215 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 RAC3P60763 192 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms