RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 OR6K3Q8NGY3 331 aa19.01■□□□□ 0.63
HMGB3-205ENST00000455596 ARL8AQ96BM9 186 aa19.01■□□□□ 0.63
HMGB3-205ENST00000455596 INPP5KQ9BT40 448 aa19.01■□□□□ 0.63
HMGB3-205ENST00000455596 TIGARQ9NQ88 270 aa19.01■□□□□ 0.63
HMGB3-205ENST00000455596 OTOGQ6ZRI0 2925 aa19.01■□□□□ 0.63
HMGB3-205ENST00000455596 CENPVL1A0A0U1RR11 272 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 EFNA2O43921 213 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 SS18L1O75177 396 aaPredicted RBP19■□□□□ 0.63
HMGB3-205ENST00000455596 IL6P05231 212 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 SHC1P29353 583 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 ANXA11P50995 505 aaKnown RBP19■□□□□ 0.63
HMGB3-205ENST00000455596 IST1P53990 364 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 TXNL4AP83876 142 aaKnown RBP19■□□□□ 0.63
HMGB3-205ENST00000455596 HPCAP84074 193 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 FUT5Q11128 374 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 SELENBP1Q13228 472 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 SKP2Q13309 424 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 GSTA3Q16772 222 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 GPAT3Q53EU6 434 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 SLC25A53Q5H9E4 307 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 GTF2IRD2BQ6EKJ0 949 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 ZNF621Q6ZSS3 439 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 EIF3MQ7L2H7 374 aaKnown RBP19■□□□□ 0.63
HMGB3-205ENST00000455596 MAVSQ7Z434 540 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 GTF2IRD2Q86UP8 949 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 RNF130Q86XS8 419 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 ZNF619Q8N2I2 560 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 CPNE4Q96A23 557 aaPredicted RBP19■□□□□ 0.63
HMGB3-205ENST00000455596 REXO5Q96IC2 774 aaKnown RBP19■□□□□ 0.63
HMGB3-205ENST00000455596 MARK4Q96L34 752 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 THUMPD3Q9BV44 507 aaKnown RBP19■□□□□ 0.63
HMGB3-205ENST00000455596 SAP130Q9H0E3 1048 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 LIME1Q9H400 295 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 PLSCR4Q9NRQ2 329 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 ST6GALNAC2Q9UJ37 374 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 CLEC4AQ9UMR7 237 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 TESMINQ9Y4I5 508 aa19■□□□□ 0.63
HMGB3-205ENST00000455596 HMGN4O00479 90 aa18.99■□□□□ 0.63
HMGB3-205ENST00000455596 SLC22A3O75751 556 aa18.99■□□□□ 0.63
HMGB3-205ENST00000455596 NTN1O95631 604 aa18.99■□□□□ 0.63
HMGB3-205ENST00000455596 PABPC4LP0CB38 370 aaKnown RBP18.99■□□□□ 0.63
HMGB3-205ENST00000455596 UBTFL6P0CB48 400 aaPredicted RBP18.99■□□□□ 0.63
HMGB3-205ENST00000455596 CDKN2CP42773 168 aa18.99■□□□□ 0.63
HMGB3-205ENST00000455596 ART1P52961 327 aa18.99■□□□□ 0.63
HMGB3-205ENST00000455596 ZNF239Q16600 458 aaKnown RBP18.99■□□□□ 0.63
HMGB3-205ENST00000455596 TMEM176BQ3YBM2 270 aaPredicted RBP18.99■□□□□ 0.63
HMGB3-205ENST00000455596 AP1ARQ63HQ0 302 aa18.99■□□□□ 0.63
HMGB3-205ENST00000455596 SPNS3Q6ZMD2 512 aa18.99■□□□□ 0.63
HMGB3-205ENST00000455596 FRRS1Q6ZNA5 592 aa18.99■□□□□ 0.63
HMGB3-205ENST00000455596 ATP6V1C2Q8NEY4 427 aa18.99■□□□□ 0.63
HMGB3-205ENST00000455596 ZIM2Q9NZV7 527 aa18.99■□□□□ 0.63
HMGB3-205ENST00000455596 SLC35A3Q9Y2D2 325 aa18.99■□□□□ 0.63
HMGB3-205ENST00000455596 RFXANKO14593 260 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 UBDO15205 165 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 DIAPH2O60879 1101 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 DNAJA2O60884 412 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 C1QCP02747 245 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 GSNP06396 782 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 CD1EP15812 388 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 PGCP20142 388 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 UGT2B10P36537 528 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 PGM1P36871 562 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 MAPK14Q16539 360 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 ZFP90Q8TF47 636 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 TMEM234Q8WY98 164 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 ROBO4Q8WZ75 1007 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 ST8SIA1Q92185 356 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 ZNF524Q96C55 264 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 ATP6V1G3Q96LB4 118 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 WFIKKN1Q96NZ8 548 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 OR52B2Q96RD2 323 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 CCM2LQ9NUG4 571 aaPredicted RBP18.98■□□□□ 0.63
HMGB3-205ENST00000455596 LIPT1Q9Y234 373 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 USH1CQ9Y6N9 552 aa18.98■□□□□ 0.63
HMGB3-205ENST00000455596 PRAMEF27A3QJZ7 478 aa18.97■□□□□ 0.63
HMGB3-205ENST00000455596 C16orf97H3BN30 126 aa18.97■□□□□ 0.63
HMGB3-205ENST00000455596 ETV2O00321 342 aaPredicted RBP18.97■□□□□ 0.63
HMGB3-205ENST00000455596 H6PDO95479 791 aa18.97■□□□□ 0.63
HMGB3-205ENST00000455596 HRGP04196 525 aa18.97■□□□□ 0.63
HMGB3-205ENST00000455596 DNASE1P24855 282 aa18.97■□□□□ 0.63
HMGB3-205ENST00000455596 CHRNEQ04844 493 aa18.97■□□□□ 0.63
HMGB3-205ENST00000455596 POU4F3Q15319 338 aa18.97■□□□□ 0.63
HMGB3-205ENST00000455596 C3orf33Q6P1S2 294 aa18.97■□□□□ 0.63
HMGB3-205ENST00000455596 FAM71CQ8NEG0 241 aa18.97■□□□□ 0.63
HMGB3-205ENST00000455596 RNF128Q8TEB7 428 aa18.97■□□□□ 0.63
HMGB3-205ENST00000455596 C7orf26Q96N11 449 aa18.97■□□□□ 0.63
HMGB3-205ENST00000455596 MED18Q9BUE0 208 aa18.97■□□□□ 0.63
HMGB3-205ENST00000455596 SRXN1Q9BYN0 137 aa18.97■□□□□ 0.63
HMGB3-205ENST00000455596 COQ10BQ9H8M1 238 aa18.97■□□□□ 0.63
HMGB3-205ENST00000455596 SDR39U1Q9NRG7 319 aaPredicted RBP18.97■□□□□ 0.63
HMGB3-205ENST00000455596 ST6GALNAC1Q9NSC7 600 aaPredicted RBP18.97■□□□□ 0.63
HMGB3-205ENST00000455596 KLHL28Q9NXS3 571 aa18.97■□□□□ 0.63
HMGB3-205ENST00000455596 ZNF226Q9NYT6 803 aa18.97■□□□□ 0.63
HMGB3-205ENST00000455596 CCDC168Q8NDH2 2452 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 KRT75O95678 551 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 NID1P14543 1247 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 AGTR1P30556 359 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 SLC7A1P30825 629 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 CCKARP32238 428 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 SESN3P58005 492 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms