RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 UBQLN3Q9H347 655 aa9.89□□□□□ -0.83
CUX1-205ENST00000425244 TP63Q9H3D4 680 aaPredicted RBP9.89□□□□□ -0.83
CUX1-205ENST00000425244 ATP13A2Q9NQ11 1180 aa9.89□□□□□ -0.83
CUX1-205ENST00000425244 C20orf141Q9NUB4 165 aa9.89□□□□□ -0.83
CUX1-205ENST00000425244 UCKL1Q9NWZ5 548 aa9.89□□□□□ -0.83
CUX1-205ENST00000425244 CBLCQ9ULV8 474 aa9.89□□□□□ -0.83
CUX1-205ENST00000425244 DAPP1Q9UN19 280 aa9.89□□□□□ -0.83
CUX1-205ENST00000425244 A6NCN8 305 aa9.89□□□□□ -0.83
CUX1-205ENST00000425244 CCDC182A6NF36 153 aa9.89□□□□□ -0.83
CUX1-205ENST00000425244 UNC119BA6NIH7 251 aa9.89□□□□□ -0.83
CUX1-205ENST00000425244 IFI30P13284 250 aa9.89□□□□□ -0.83
CUX1-205ENST00000425244 FOSL1P15407 271 aa9.89□□□□□ -0.83
CUX1-205ENST00000425244 PAICSP22234 425 aaKnown RBP9.89□□□□□ -0.83
CUX1-205ENST00000425244 APEX1P27695 318 aaKnown RBP9.89□□□□□ -0.83
CUX1-205ENST00000425244 SHC2P98077 582 aa9.89□□□□□ -0.83
CUX1-205ENST00000425244 EXOSC7Q15024 291 aaKnown RBP9.89□□□□□ -0.83
CUX1-205ENST00000425244 MRPL2Q5T653 305 aaKnown RBP9.89□□□□□ -0.83
CUX1-205ENST00000425244 FIGLAQ6QHK4 219 aa9.89□□□□□ -0.83
CUX1-205ENST00000425244 WDR88Q6ZMY6 472 aa9.89□□□□□ -0.83
CUX1-205ENST00000425244 RERGQ96A58 199 aaPredicted RBP9.89□□□□□ -0.83
CUX1-205ENST00000425244 ISG20L2Q9H9L3 353 aaKnown RBP9.89□□□□□ -0.83
CUX1-205ENST00000425244 KRCC1Q9NPI7 259 aaPredicted RBP9.89□□□□□ -0.83
CUX1-205ENST00000425244 STARD5Q9NSY2 213 aa9.89□□□□□ -0.83
CUX1-205ENST00000425244 GABRPO00591 440 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 DVL2O14641 736 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 POLR1CO15160 346 aaPredicted RBP9.88□□□□□ -0.83
CUX1-205ENST00000425244 KLF4O43474 513 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 FGF17O60258 216 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 AGR2O95994 175 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 HMGN1P05114 100 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 HTR2AP28223 471 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 HTR1FP30939 366 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 NUDT1P36639 197 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 AFF3P51826 1226 aaKnown RBP9.88□□□□□ -0.83
CUX1-205ENST00000425244 ZNF136P52737 540 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 ZNF155Q12901 538 aaPredicted RBP9.88□□□□□ -0.83
CUX1-205ENST00000425244 ARHGAP11BQ3KRB8 267 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 EIPR1Q53HC9 387 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 DCST2Q5T1A1 773 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 FCRL6Q6DN72 434 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 CNIH2Q6PI25 160 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 ZC3H14Q6PJT7 736 aaKnown RBP9.88□□□□□ -0.83
CUX1-205ENST00000425244 C1orf210Q8IVY1 113 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 OR52L1Q8NGH7 329 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 LILRB4Q8NHJ6 448 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 NT5CQ8TCD5 201 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 GRHL3Q8TE85 626 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 UBASH3BQ8TF42 649 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 SMAD5Q99717 465 aaKnown RBP9.88□□□□□ -0.83
CUX1-205ENST00000425244 ENKD1Q9H0I2 346 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 OR52D1Q9H346 318 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 ACTR10Q9NZ32 417 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 TRDV1A0A1B0GX56 115 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 SHISA3A0PJX4 238 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 MEIOCA2RUB1 952 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 TRAPPC13A5PLN9 417 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 C12orf71A8MTZ7 269 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 H0YGG7 62 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 CHST10O43529 356 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 IDH3BO43837 385 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 HLA-DPB1P04440 258 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 ZGLP1P0C6A0 271 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 SAGP10523 405 aaPredicted RBP9.88□□□□□ -0.83
CUX1-205ENST00000425244 MYF5P13349 255 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 MAKP20794 623 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 ARF3P61204 181 aaPredicted RBP9.88□□□□□ -0.83
CUX1-205ENST00000425244 PPP1CAP62136 330 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 EEF1A1P68104 462 aaKnown RBP9.88□□□□□ -0.83
CUX1-205ENST00000425244 IL18Q14116 193 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 KIR2DS3Q14952 304 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 ELOCQ15369 112 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 OR1Q1Q15612 314 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 TRIQKQ629K1 86 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 ZNF322Q6U7Q0 402 aaPredicted RBP9.88□□□□□ -0.83
CUX1-205ENST00000425244 ABHD13Q7L211 337 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 SAMD14Q8IZD0 417 aaPredicted RBP9.88□□□□□ -0.83
CUX1-205ENST00000425244 SLC38A6Q8IZM9 456 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 ZNF485Q8NCK3 441 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 TMEM52Q8NDY8 209 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 OR10H4Q8NGA5 316 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 OR6F1Q8NGZ6 308 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 ENKURQ8TC29 256 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 PIGKQ92643 395 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 MED18Q9BUE0 208 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 OR51V1Q9H2C8 321 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 MAT2BQ9NZL9 334 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 PTGFRNQ9P2B2 879 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 PCOLCE2Q9UKZ9 415 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 GRIP1Q9Y3R0 1128 aa9.88□□□□□ -0.83
CUX1-205ENST00000425244 URADA6NGE7 173 aa9.87□□□□□ -0.83
CUX1-205ENST00000425244 STX11O75558 287 aa9.87□□□□□ -0.83
CUX1-205ENST00000425244 REM1O75628 298 aa9.87□□□□□ -0.83
CUX1-205ENST00000425244 MRPL3P09001 348 aaKnown RBP9.87□□□□□ -0.83
CUX1-205ENST00000425244 SLC2A2P11168 524 aaPredicted RBP9.87□□□□□ -0.83
CUX1-205ENST00000425244 BMP7P18075 431 aa9.87□□□□□ -0.83
CUX1-205ENST00000425244 GABRA3P34903 492 aa9.87□□□□□ -0.83
CUX1-205ENST00000425244 MRPS15P82914 257 aaKnown RBP9.87□□□□□ -0.83
CUX1-205ENST00000425244 TMEM44Q2T9K0 475 aa9.87□□□□□ -0.83
CUX1-205ENST00000425244 TBRG1Q3YBR2 411 aa9.87□□□□□ -0.83
CUX1-205ENST00000425244 ZFP69Q49AA0 526 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms