RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 DNAJA4Q8WW22 397 aaPredicted RBP15.66■□□□□ 0.1
CCDC28B-202ENST00000421922 CCNL2Q96S94 520 aaPredicted RBP15.66■□□□□ 0.1
CCDC28B-202ENST00000421922 SMURF2Q9HAU4 748 aa15.66■□□□□ 0.1
CCDC28B-202ENST00000421922 KRT84Q9NSB2 600 aa15.66■□□□□ 0.1
CCDC28B-202ENST00000421922 SMPD3Q9NY59 655 aaPredicted RBP15.66■□□□□ 0.1
CCDC28B-202ENST00000421922 USE1Q9NZ43 259 aa15.66■□□□□ 0.1
CCDC28B-202ENST00000421922 STMN3Q9NZ72 180 aa15.66■□□□□ 0.1
CCDC28B-202ENST00000421922 HEATR5AQ86XA9 2040 aa15.66■□□□□ 0.1
CCDC28B-202ENST00000421922 A0A1B0GWA3 101 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 ARRDC5A6NEK1 342 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 CHP2O43745 196 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 ALPLP05186 524 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 ACAA2P42765 397 aaKnown RBP15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 LIMS1P48059 325 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 IDH2P48735 452 aaKnown RBP15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 MASP1P48740 699 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 ST13P50502 369 aaKnown RBP15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 HLCSP50747 726 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 TAF11Q15544 211 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 WLSQ5T9L3 541 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 PODNL1Q6PEZ8 512 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 ULK3Q6PHR2 472 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 CBLN3Q6UW01 205 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 LSMEM1Q8N8F7 131 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 OR4K17Q8NGC6 315 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 OR9Q2Q8NGE9 314 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 OR5W2Q8NH69 310 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 PIGXQ8TBF5 258 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 RDH12Q96NR8 316 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 UTP23Q9BRU9 249 aaKnown RBP15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 ING2Q9H160 280 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 GALNT9Q9HCQ5 603 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 GPR83Q9NYM4 423 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 CNIH4Q9P003 139 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 ENOPH1Q9UHY7 261 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 CEP295Q9C0D2 2601 aa15.65■□□□□ 0.1
CCDC28B-202ENST00000421922 CPAMD8Q8IZJ3 1885 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 A0A0B4J2E0 115 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 A0A1B0GX12 115 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 SH3PXD2BA1X283 911 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 A6NL46 340 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 OIP5O43482 229 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 GP1BBP13224 206 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 MSX1P28360 303 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 CASP3P42574 277 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 PPP2R2BQ00005 443 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 COL28A1Q2UY09 1125 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 SWT1Q5T5J6 900 aaKnown RBP15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 PRAMEF20Q5VT98 475 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 AGAP7PQ5VUJ5 663 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 BICRALQ6AI39 1079 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 TMEM81Q6P7N7 255 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 TSPYL5Q86VY4 417 aaPredicted RBP15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 APLFQ8IW19 511 aaPredicted RBP15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 AQP11Q8NBQ7 271 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 ZNF555Q8NEP9 628 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 OR4K5Q8NGD3 323 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 SNIP1Q8TAD8 396 aaKnown RBP15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 SLC7A13Q8TCU3 470 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 ACOT11Q8WXI4 607 aaPredicted RBP15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 PSMF1Q92530 271 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 ARSGQ96EG1 525 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 MPP4Q96JB8 637 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 ZNF597Q96LX8 424 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 AGAP4Q96P64 663 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 FEVQ99581 238 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 BARD1Q99728 777 aaKnown RBP15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 TIMMDC1Q9NPL8 285 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 SACM1LQ9NTJ5 587 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 ANKRD10Q9NXR5 420 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 MGAT4BQ9UQ53 548 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 POFUT2Q9Y2G5 429 aa15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 CHCHD2Q9Y6H1 151 aaPredicted RBP15.64■□□□□ 0.09
CCDC28B-202ENST00000421922 ANKUB1A6NFN9 424 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 ELOA3DA6NLF2 546 aaPredicted RBP15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 ADAP00813 363 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 RAPSNQ13702 412 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 DEFB109BQ30KR1 87 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 ELOA3BQ3SY89 546 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 LINC00696Q6ZRV3 163 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 GALNT5Q7Z7M9 940 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 ELOA3Q8NG57 546 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 PAQR8Q8TEZ7 354 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 CYGBQ8WWM9 190 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 TMEM234Q8WY98 164 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 HS6ST2Q96MM7 605 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 PSD2Q9BQI7 771 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 RTN4RQ9BZR6 473 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 CCDC86Q9H6F5 360 aaKnown RBP15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 PTGES2Q9H7Z7 377 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 CPNE5Q9HCH3 593 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 PAPOLBQ9NRJ5 636 aaKnown RBP15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 MAN2C1Q9NTJ4 1040 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 TAS2R10Q9NYW0 307 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 RAB26Q9ULW5 256 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 C15orf41Q9Y2V0 281 aa15.63■□□□□ 0.09
CCDC28B-202ENST00000421922 C2orf72A6NCS6 295 aa15.62■□□□□ 0.09
CCDC28B-202ENST00000421922 TLX3O43711 291 aaPredicted RBP15.62■□□□□ 0.09
CCDC28B-202ENST00000421922 CDC40O60508 579 aaKnown RBP eCLIP15.62■□□□□ 0.09
CCDC28B-202ENST00000421922 CCL3P10147 92 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms